# BiRGRN

**Repository Path**: DHUDBLab/bi-rgrn

## Basic Information

- **Project Name**: BiRGRN
- **Description**: The code for BiRGRN
- **Primary Language**: Python
- **License**: MulanPSL-2.0
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 3
- **Forks**: 1
- **Created**: 2021-07-25
- **Last Updated**: 2023-02-02

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README

# BiRGRN

## 1、How to use

```
python main.py expressDataPath supervisionDataPath Top_k geneNumber timeStep
```

+ expressDataPath：Gene expression data path (sorted by time)
+ supervisionDataPath：Priori knowledge path (txt format "," segmentation)
+ Top_k：Need to infer how many top edges
+ geneNumber：Number of genes
+ timeStep：RNN unfolding time step (different data sets have different measurement intervals, the data set in this paper is recommended to be 4)

## 2、Environmental

This code is implemented based on python, and the environment continues to be as follows：

```
pip install -r environment.txt
```

## 3、Other message

Please refer to the data in this paper for the input data format