# bio-pipeline

**Repository Path**: biozzc/bio-pipeline

## Basic Information

- **Project Name**: bio-pipeline
- **Description**: My collection of light bioinformatics analysis pipelines for specific tasks
- **Primary Language**: Unknown
- **License**: Not specified
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2021-09-15
- **Last Updated**: 2021-09-15

## Categories & Tags

**Categories**: Uncategorized

**Tags**: 365-days

## README

Bio-Pipeline
=============
A collection of light bioinformatics analysis pipelines for specific tasks.

* Synonymous calculation
* Blast nearby (given anchors, BLAST around local regions, useful for finding
  CNS)
* Lastz wrapper (print BLAST-tabular output, also parallelize the calculation)
* BioMart connector for Python
* Performing statistical test for gap deletion models
* Print feature sequences given GFF file and FASTA file (e.g. extracting CDS
  sequences)

Dive into specific folder to view more detailed usage on each application.