# detectRUNS

**Repository Path**: chens1209/detectRUNS

## Basic Information

- **Project Name**: detectRUNS
- **Description**: detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity
- **Primary Language**: Unknown
- **License**: Not specified
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2020-08-11
- **Last Updated**: 2020-12-20

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README


Detect Runs of Homozygosity and Runs of Heterozygosity in diploid genomes
=========================================================================

[![Travis-CI Build Status](https://travis-ci.org/bioinformatics-ptp/detectRUNS.svg?branch=master)](https://travis-ci.org/bioinformatics-ptp/detectRUNS)
[![codecov.io](https://codecov.io/github/bioinformatics-ptp/detectRUNS/coverage.svg?branch=master)](https://codecov.io/github/bioinformatics-ptp/detectRUNS?branch=master)
[![CRAN version](http://www.r-pkg.org/badges/version/detectRUNS)](https://cran.r-project.org/package=detectRUNS)


This repository contains the source code for the R package `detectRUNS` and related
`performance` tests. Here's the directory content:

```
├── detectRUNS
├── performance
├── README.md
└── TODO
```

`detectRUNS` implements two statistical approaches to runs' detection:
- a sequential approach (consecutive runs, as described in Marras et al. 2015, and implemented in the software package Zanardi: https://github.com/bioinformatics-ptp/Zanardi);
- an approach based on overlapping sliding windows (à la Plink: Purcell et al. 2007)

More info in the Google Doc (https://goo.gl/yXR7iA)