# DeepMSim

**Repository Path**: coracoding/DeepMSim

## Basic Information

- **Project Name**: DeepMSim
- **Description**: No description available
- **Primary Language**: Unknown
- **License**: GPL-3.0
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2020-03-26
- **Last Updated**: 2020-12-19

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README

# DeepMSim: A Deep Learning based MS/MS spectra Simulator

### *Muhammad Haseeb and Sumesh Kumar*
##### *CAP5610: Machine Learning - Fall 2019*
##### *School of Computing and Information Sciences*
##### *Florida International University (FIU)*

References: 
1. https://www.tensorflow.org/tutorials/text/transformer
2. https://www.tensorflow.org/tutorials/customization/basics
3. https://github.com/neulab/word-embeddings-for-nmt
4. http://jalammar.github.io/illustrated-transformer/
5. http://nlp.seas.harvard.edu/2018/04/03/attention.html
6. https://colab.research.google.com/github/tensorflow/tensor2tensor/blob/master/tensor2tensor/notebooks/hello_t2t.ipynb
7. https://medium.com/@_init_/why-bert-has-3-embedding-layers-and-their-implementation-details-9c261108e28a
8. https://arxiv.org/abs/1706.03762
9. https://arxiv.org/abs/1810.04805


Datasets:
https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:clib:mousehcd_selected20141124