# MetaMapR **Repository Path**: hcji/MetaMapR ## Basic Information - **Project Name**: MetaMapR - **Description**: No description available - **Primary Language**: R - **License**: GPL-3.0 - **Default Branch**: master - **Homepage**: None - **GVP Project**: No ## Statistics - **Stars**: 0 - **Forks**: 0 - **Created**: 2018-05-24 - **Last Updated**: 2024-06-15 ## Categories & Tags **Categories**: Uncategorized **Tags**: None ## README README

MetaMapR

A metabolomic network mapping tool

demo

Screenshots

Installation

Requires R and Shiny. Try it out using the Shiny glimmer server or run locally by pasting the following code into the R console:

library(shiny)
shiny::runGitHub('MetaMapR','dgrapov')

Alternatively download the .zip file, unzip and run the following code (example for file on desktop)

library(shiny)
shiny::runApp('~/../Desktop/MetaMapR-master/MetaMapR-master')

NOTE: modify file paths for OSX and LINUX

Instructions

Information

Version: 1.4.0 (1/18/2015)

News: See the newest features.

License: GNU General Public License (v3), read more

Citation

If you find MetaMapR useful please cite this tool using the doi listed below.

Dmitry Grapov (2014) MetaMapR: Metabolomic Network Analysis and Visualization Tool

DOI

TODO

  • add partial correlations
  • add cytoscape.js networks
  • enable network mapping

FAQ

  1. How are multiple edge types handled in the network output?

The default setting for returning all edge types or only unique edges can be found under the network tab using the unique edges checkbox. If the option is selected then edges are returned based on a hierarchy Biochemical > Structural > Mass Spectral > Correlation, otherwise all edges are returned.