# MSIfromHE

**Repository Path**: huogenwang/MSIfromHE

## Basic Information

- **Project Name**: MSIfromHE
- **Description**: predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer
- **Primary Language**: Unknown
- **License**: MIT
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2021-03-16
- **Last Updated**: 2021-03-16

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README

# MSIfromHE
Predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer

## what is this?
This is the source code for an unpublished project currently under review at a scientific journal. To reproduce the codes, you need to download histological whole slide images from TCGA as noted in the manuscript and install the following dependencies:

- Color normalization toolbox (https://warwick.ac.uk/fac/sci/dcs/research/tia/software/sntoolbox/)
- MatSurv (https://de.mathworks.com/matlabcentral/fileexchange/64582-matsurv)

The codes are written in MATLAB and are thoroughly commented. For a more detailed description of the method, please refer to the manuscript which will be linked here after acceptance. 

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