# seurat-disk

**Repository Path**: joyeric_admin_admin/seurat-disk

## Basic Information

- **Project Name**: seurat-disk
- **Description**: https://gitee.com/joyeric_admin_admin/seurat-disk.git
- **Primary Language**: Unknown
- **License**: GPL-3.0
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2022-08-24
- **Last Updated**: 2024-08-31

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README


<!-- README.md is generated from README.Rmd. Please edit that file -->

# SeuratDisk v0.0.0.9015

<!-- badges: start -->

[![CRAN/METACRAN](https://img.shields.io/cran/v/SeuratDisk)](https://cran.r-project.org/package=SeuratDisk)
[![Lifecycle](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://github.com/mojaveazure/seurat-disk)
<!-- badges: end -->

<!-- Interfaces for HDF5-based Single Cell File Formats -->

The h5Seurat file format is specifically designed for the storage and
analysis of multi-modal single-cell and spatially-resolved expression
experiments, for example, from CITE-seq or 10X Visium technologies. It
holds all molecular information and associated metadata, including (for
example) nearest-neighbor graphs, dimensional reduction information,
spatial coordinates and image data, and cluster labels. We also support
rapid and on-disk conversion between h5Seurat and AnnData objects, with
the goal of enhancing interoperability between Seurat and Scanpy.

## Installation

SeuratDisk is not currently available on CRAN. You can install it from
[GitHub](https://github.com/mojaveazure/seurat-disk) with:

``` r
if (!requireNamespace("remotes", quietly = TRUE)) {
  install.packages("remotes")
}
remotes::install_github("mojaveazure/seurat-disk")
```

## Dependencies

SeuratDisk depends on the following non-standard packages:

|           Package           |                      CRAN Webpage                       |                         Source                         |                                   Website                                    |
| :-------------------------: | :-----------------------------------------------------: | :----------------------------------------------------: | :--------------------------------------------------------------------------: |
|             cli             |     [CRAN](https://cran.r-project.org/package=cli)      |     [GitHub](https://github.com/r-lib/cli#readme)      |                                      –                                       |
|           crayon            |    [CRAN](https://cran.r-project.org/package=crayon)    |    [GitHub](https://github.com/r-lib/crayon#readme)    |                                      –                                       |
|            hdf5r            |    [CRAN](https://cran.r-project.org/package=hdf5r)     |      [GitHub](https://github.com/hhoeflin/hdf5r)       |                 [Website](https://hhoeflin.github.io/hdf5r/)                 |
|           Matrix            |    [CRAN](https://cran.r-project.org/package=Matrix)    |                           –                            |               [Website](http://Matrix.R-forge.R-project.org/)                |
|             R6              |      [CRAN](https://cran.r-project.org/package=R6)      |         [GitHub](https://github.com/r-lib/R6/)         |                       [Website](https://r6.r-lib.org)                        |
|            rlang            |    [CRAN](https://cran.r-project.org/package=rlang)     |        [GitHub](https://github.com/r-lib/rlang)        |                      [Website](https://rlang.r-lib.org)                      |
|           Seurat            |    [CRAN](https://cran.r-project.org/package=Seurat)    |     [GitHub](https://github.com/satijalab/seurat)      |                   [Website](https://satijalab.org/seurat)                    |
|        SeuratObject         | [CRAN](https://cran.r-project.org/package=SeuratObject) | [GitHub](https://github.com/mojaveazure/seurat-object) |                   [Website](https://satijalab.org/seurat)                    |
|           stringi           |   [CRAN](https://cran.r-project.org/package=stringi)    |                           –                            | \[Website\](<https://stringi.gagolewski.com/> <http://site.icu-project.org/> |
| <https://www.unicode.org/>) |                                                         |                                                        |                                                                              |
|            withr            |    [CRAN](https://cran.r-project.org/package=withr)     |    [GitHub](https://github.com/r-lib/withr#readme)     |                      [Website](https://withr.r-lib.org)                      |