# ctDNAtools

**Repository Path**: kaizt/ctDNAtools

## Basic Information

- **Project Name**: ctDNAtools
- **Description**: No description available
- **Primary Language**: Unknown
- **License**: MIT
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2025-04-17
- **Last Updated**: 2025-04-17

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README


# ctDNAtools <a href='https:/alkodsi.github.io/ctDNAtools'><img src='man/figures/logo.png' align="right" height="180" /></a>

<!-- badges: start -->
[![Travis build status](https://travis-ci.com/alkodsi/ctDNAtools.svg?branch=master)](https://travis-ci.com/alkodsi/ctDNAtools)
[![Codecov test coverage](https://codecov.io/gh/alkodsi/ctDNAtools/branch/master/graph/badge.svg)](https://codecov.io/gh/alkodsi/ctDNAtools?branch=master)
[![DOI:10.1101/2020.01.27.912790](https://zenodo.org/badge/DOI/10.1101/2020.01.27.912790.svg)](https://doi.org/10.1101/2020.01.27.912790)
[![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://www.tidyverse.org/lifecycle/#stable)
[![CRAN status](https://www.r-pkg.org/badges/version/ctDNAtools)](https://CRAN.R-project.org/package=ctDNAtools)
<!-- badges: end -->
[![metacran downloads](https://cranlogs.r-pkg.org/badges/grand-total/ctDNAtools)](https://cran.r-project.org/package=ctDNAtools)
[![metacran downloads](https://cranlogs.r-pkg.org/badges/ctDNAtools)](https://cran.r-project.org/package=ctDNAtools)

The ctDNAtools package provides functionalities to analyze circulating tumor DNA (ctDNA)/ cell-free DNA (cfDNA) sequencing data.
The tools cover analysis of ctDNA/cfDNA fragmentation and analysis of cancer minimal residual disease.

## Package overview

<a href='https:/alkodsi.github.io/ctDNAtools'><img src='man/figures/ctDNAtools_overview.png' align="center" height="680" /></a>

## Installation


``` r
# From CRAN
install.packages("ctDNAtools")

# From github

# install.packages("devtools")
devtools::install_github("alkodsi/ctDNAtools")
```

## Getting started

Browse the vignette [here](https://alkodsi.github.io/ctDNAtools/articles/ctDNAtools.html)

## Citation

Alkodsi A, Meriranta L, Pasanen A, Leppä S (2020). “ctDNAtools: An R package to
work with sequencing data of circulating tumor DNA.” _bioRxiv_.