# Kleborate

**Repository Path**: liaochenlanruo/Kleborate

## Basic Information

- **Project Name**: Kleborate
- **Description**: No description available
- **Primary Language**: Unknown
- **License**: GPL-3.0
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 1
- **Created**: 2022-07-06
- **Last Updated**: 2022-07-06

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README

<p align="center"><img src="logo.png" alt="Kleborate" width="400"></p>

Kleborate is a tool to screen genome assemblies of _Klebsiella pneumoniae_ and the _Klebsiella pneumoniae_ species complex (KpSC) for:
 * MLST sequence type
 * species (e.g. _K. pneumoniae_, _K. quasipneumoniae_, _K. variicola_, etc.)
 * ICE<i>Kp</i> associated virulence loci: yersiniabactin (_ybt_), colibactin (_clb_), salmochelin (_iro_), hypermucoidy (_rmpA_)
 * virulence plasmid associated loci: salmochelin (_iro_), aerobactin (_iuc_), hypermucoidy (_rmpA_, _rmpA2_)
 * antimicrobial resistance: acquired genes, SNPs, gene truncations and intrinsic β-lactamases
 * K (capsule) and O antigen (LPS) serotype prediction, via _wzi_ alleles and [Kaptive](https://github.com/katholt/Kaptive)

For full documentation, please [go to the Kleborate wiki](https://github.com/katholt/Kleborate/wiki)!

If you use Kleborate, please cite the preprint: [Lam, MMC. et al. Genomic surveillance framework and global population structure for Klebsiella pneumoniae. bioRxiv (2020).](https://www.biorxiv.org/content/10.1101/2020.12.14.422303v1)