# quantiseq_in_r

**Repository Path**: mirrors_grst/quantiseq_in_r

## Basic Information

- **Project Name**: quantiseq_in_r
- **Description**: run the quanTIseq deconvolution step on a gene expression matrix directly in R
- **Primary Language**: Unknown
- **License**: Not specified
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2020-08-08
- **Last Updated**: 2026-05-23

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README

# quanTIseq in R

Wrap the deconvolution part of `quanTIseq` ([Finotello F. et al, 2017](https://doi.org/10.1101/223180)) into an
R function. The R function can be directly called with a gene expression matrix.

* See [test_quantiseq.Rmd](test_quantiseq.Rmd) for usage examples.
* See [quanTIseq_decon.R](quanTIseq_decon.R) for the implementation of the function.