# MicrobiomeProfiler

**Repository Path**: swcyo/MicrobiomeProfiler

## Basic Information

- **Project Name**: MicrobiomeProfiler
- **Description**: No description available
- **Primary Language**: Unknown
- **License**: Not specified
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2021-08-11
- **Last Updated**: 2021-09-06

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README

# Introduction

`MicrobiomeProfiler` is an R-shiny package based on `clusterProfiler`,
is user-friendly tool for functional enrichment analysis in microbiome
data ( G Yu, et al., 2012).

# Installation

You can install `MicrobiomeProfiler` from github using devtools :

    ## Note that having installed clusterProfiler,config,DT,enrichplot,golem,magrittr,shiny,shinyWidgets,shinycustomloader,htmltools,ggplot2
    if (!requireNamespace("devtools", quietly=TRUE))
        install.packages("devtools")
    devtools::install_github("YuLab-SMU/MicrobiomeProfiler")

# Quick Guides

    library(MicrobiomeProfiler)
    run_app()

# Reference

***G Yu***, LG Wang, Y Han, QY He. clusterProfiler: an R package for
comparing biological themes among gene clusters. *OMICS: A Journal of
Integrative Biology* 2012, 16(5):284-287.
<doi:%5B10.1089/omi.2011.0118>\](<http://dx.doi.org/10.1089/omi.2011.0118>)