# epiScanpy

**Repository Path**: wukaiqi/epiScanpy

## Basic Information

- **Project Name**: epiScanpy
- **Description**: No description available
- **Primary Language**: Unknown
- **License**: BSD-3-Clause
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2024-08-06
- **Last Updated**: 2024-08-06

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README


EpiScanpy – Epigenomics single cell analysis in python
======================================================

**EpiScanpy** is a toolkit to analyse single-cell open chromatin (scATAC-seq) and single-cell DNA methylation (for example scBS-seq) data. **EpiScanpy** is the epigenomic extension of the very popular scRNA-seq analysis tool **Scanpy** (`Genome Biology <https://doi.org/10.1186/s13059-017-1382-0>`__, 2018) [Wolf18]. For more information on scanpy, read the following `documentation <https://scanpy.readthedocs.io>`__. 

EpiScanpy paper is now accessible on `Nature Communications <https://www.nature.com/articles/s41467-021-25131-3>`__. For more information on how to use the package, more information are available on the `website <https://colomemaria.github.io/episcanpy_doc>`__. 


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Documentation
=============

The documentation for epiScanpy is available `here <https://colomemaria.github.io/episcanpy_doc/>`__. If epiScanpy is useful to your research, consider citing `epiScanpy <https://www.nature.com/articles/s41467-021-25131-3>`__.