# surTNBC

**Repository Path**: xiayh17/surTNBC

## Basic Information

- **Project Name**: surTNBC
- **Description**: No description available
- **Primary Language**: Unknown
- **License**: Not specified
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 2
- **Forks**: 1
- **Created**: 2021-04-10
- **Last Updated**: 2025-05-23

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README


<!-- README.md is generated from README.Rmd. Please edit that file -->

# surTNBC

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The goal of surTNBC is to do survival analysis from a deg database

## Installation

You can install the released version of surTNBC from
[github](https://github.com/xiayh17/surTNBC) or [gitee](https://gitee.com/xiayh17/surTNBC) with:

``` r
devtools::install_github("xiayh17/surTNBC")
devtools::install_git("https://gitee.com/xiayh17/surTNBC")
```

## download data
click to download
[iso_tpm.txt](https://yonghexia-my.sharepoint.com/:t:/g/personal/xiayh_yonghexia_onmicrosoft_com/Ef6PWaUOVFRDrEJ04nsXmfkByKL0DY1h8jBnjd2UyOiuig?e=4Vsmkx)
[clinical.txt](https://yonghexia-my.sharepoint.com/:t:/g/personal/xiayh_yonghexia_onmicrosoft_com/Ef-8-hnDXatBnmmFWEQWB24BFj6Qb94GTpKHdMfRmYwJGg?e=cSbO8e)
## data prepare
create this directory below your working directory

inst/app/data/

save clinical.txt and portal-database-output.sqlite into it

``` r
library(DBI)
library(dplyr)
library(dbplyr)
iso_tpm2 <- data.table::fread("iso_tpm.txt")
iso_tpm2 <- iso_tpm2 %>% dplyr::rename(names = V1)
con <- DBI::dbConnect(RSQLite::SQLite(), "inst/app/data/portal-database-output.sqlite")
dplyr::copy_to(con, iso_tpm2, "iso_tpm2",
               overwrite = TRUE,
               temporary = FALSE, 
               indexes = list(
                 c("names")
               )
)
# call dbDisconnect() when finished working with a connection 
DBI::dbDisconnect(con)
```

## run
surTNBC::run_app()