# MICCAI-OpenSourcePapers **Repository Path**: zhujunan/MICCAI-OpenSourcePapers ## Basic Information - **Project Name**: MICCAI-OpenSourcePapers - **Description**: No description available - **Primary Language**: Unknown - **License**: Apache-2.0 - **Default Branch**: master - **Homepage**: None - **GVP Project**: No ## Statistics - **Stars**: 0 - **Forks**: 1 - **Created**: 2022-06-05 - **Last Updated**: 2022-07-08 ## Categories & Tags **Categories**: Uncategorized **Tags**: None ## README # MICCAI-OpenSourcePapers MICCAI 2021 Open Source Papers > We use "Link to the code repository" in [MICCAI2021 Openreview](https://miccai2021.org/openaccess/paperlinks/index.html) as the keyword to retrieve the open-source papers. Please feel free to pull requests for the unlisted open-source articles. | Title | Code | |-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|---------------------------------------------------------------------------------------------------------------------------------------------| | [2.5D Thermometry Maps for MRI-guided Tumor Ablation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/001-Paper1891.html) | [Code](https://github.com/jalpers/2.5DThermometryReconstruction) | | [2D Histology Meets 3D Topology: Cytoarchitectonic Brain Mapping with Graph Neural Networks](https://miccai2021.org/openaccess/paperlinks/2021/09/01/002-Paper0547.html) | [Code](https://jugit.fz-juelich.de/c.schiffer/miccai2021_2d_histology_meets_3d_topology) | | [3D-UCaps: 3D Capsules Unet for Volumetric Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/007-Paper1688.html) | [Code](https://github.com/VinAIResearch/3D-UCaps) | | [4D-Foot: A fully automated pipeline of four-dimensional analysis of the foot bones using bi-plane X-ray video and CT](https://miccai2021.org/openaccess/paperlinks/2021/09/01/009-Paper2286.html) | [Code](https://github.com/YoshitoOtake/4DFoot) | | [A computational geometry approach for modeling neuronal fiber pathways](https://miccai2021.org/openaccess/paperlinks/2021/09/01/011-Paper0417.html) | [Code](https://github.com/UCSB-VRL/ReebGraph) | | [A Deep Discontinuity-Preserving Image Registration Network](https://miccai2021.org/openaccess/paperlinks/2021/09/01/013-Paper0479.html) | [Code](https://github.com/cistib/DDIR) | | [A Deep Learning Bidirectional Temporal Tracking Algorithm for Automated Blood Cell Counting from Non-invasive Capillaroscopy Videos](https://miccai2021.org/openaccess/paperlinks/2021/09/01/014-Paper0773.html) | [Code](https://github.com/DurrLab/CycleTrack) | | [A Deep Network for Joint Registration and Parcellation of Cortical Surfaces](https://miccai2021.org/openaccess/paperlinks/2021/09/01/015-Paper2146.html) | [Code](https://github.com/zhaofenqiang/JointRegAndParc) | | [A Deep Reinforced Tree-traversal Agent for Coronary Artery Centerline Extraction](https://miccai2021.org/openaccess/paperlinks/2021/09/01/016-Paper1256.html) | [Code](https://github.com/LzVv123456/Deep-Reinforced-Tree-Traversal) | | [A Hierarchical Feature Constraint to CamouflageMedical Adversarial Attacks](https://miccai2021.org/openaccess/paperlinks/2021/09/01/017-Paper1101.html) | [Code](https://github.com/qsyao/Hierarchical_Feature_Constraint) | | [A Matrix Auto-encoder Framework to Align the Functional and Structural Connectivity Manifolds as Guided by Behavioral Phenotypes](https://miccai2021.org/openaccess/paperlinks/2021/09/01/021-Paper2515.html) | [Code](https://github.com/Niharika-SD/Matrix-Autoencoder) | | [A Neural Framework for Multi-Variable Lesion Quantification Through B-mode Style Transfer](https://miccai2021.org/openaccess/paperlinks/2021/09/01/024-Paper0846.html) | [Code](https://github.com/joseph9337/BQI-Net) | | [A new Approach to Orthopedic Surgery Planning using Deep Reinforcement Learning and Simulation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/025-Paper2008.html) | [Code](https://caspa.visualstudio.com/CARD%20public/_git/MICCAI21_DRL_FHRO) | | [A Principled Approach to Failure Analysis and Model Repairment: Demonstration in Medical Imaging](https://miccai2021.org/openaccess/paperlinks/2021/09/01/028-Paper1329.html) | [Code](https://github.com/Rokken-lab6/Failure-Analysis-and-Model-Repairment) | | [A Spatial Guided Self-supervised Clustering Network for Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/031-Paper1117.html) | [Code](https://github.com/osmond332/Spatial_Guided_Self_Supervised_Clustering) | | [A spherical convolutional neural network for white matter structure imaging via diffusion MRI](https://miccai2021.org/openaccess/paperlinks/2021/09/01/032-Paper2377.html) | [Code](https://gitlab.inria.fr/ssedlar/fourier_s2cnn) | | [A Structural Causal Model MR Images of Multiple Sclerosis](https://miccai2021.org/openaccess/paperlinks/2021/09/01/033-Paper1013.html) | [Code](https://github.com/jcreinhold/counterfactualms) | | [A Topological-Attention ConvLSTM Network and Its Application to EM Images](https://miccai2021.org/openaccess/paperlinks/2021/09/01/034-Paper0481.html) | [Code](https://github.com/YangjiaqiDig/Topology-Attention-ConvLSTM) | | [ACN: Adversarial Co-training Network for Brain Tumor Segmentation with Missing Modalities](https://miccai2021.org/openaccess/paperlinks/2021/09/01/039-Paper0901.html) | [Code](https://github.com/Wangyixinxin/ACN) | | [Acoustic-based Spatio-temporal Learning for Press-fit Evaluation of Femoral Stem Implants](https://miccai2021.org/openaccess/paperlinks/2021/09/01/040-Paper2306.html) | [Code](https://caspa.visualstudio.com/CARD%20public/_git/AudioFemoralStem) | | [Adversarial learning of cancer tissue representations](https://miccai2021.org/openaccess/paperlinks/2021/09/01/045-Paper2230.html) | [Code](https://github.com/AdalbertoCq/Adversarial-learning-of-cancer-tissue-representations) | | [Airway Anomaly Detection by Graph Neural Network](https://miccai2021.org/openaccess/paperlinks/2021/09/01/046-Paper0604.html) | [Code](https://github.com/tznbz/Airway-Anomaly-Detection-by-Prototype-based-Graph-Neural-Network.git) | | [AMINN: Autoencoder-based Multiple Instance Neural Network Improves Outcome Prediction of Multifocal Liver Metastases](https://miccai2021.org/openaccess/paperlinks/2021/09/01/049-Paper0383.html) | [Code](https://github.com/martellab-sri/AMINN) | | [Anatomy of Domain Shift Impact on U-Net Layers in MRI Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/051-Paper0692.html) | [Code](https://github.com/neuro-ml/domain_shift_anatomy) | | [Anatomy-Constrained Contrastive Learning for Synthetic Segmentation without Ground-truth](https://miccai2021.org/openaccess/paperlinks/2021/09/01/052-Paper0180.html) | [Code](https://github.com/bbbbbbzhou/AccSeg-Net) | | [AnaXNet: Anatomy Aware Multi-label Finding Classification in Chest X-ray](https://miccai2021.org/openaccess/paperlinks/2021/09/01/053-Paper1467.html) | [Code](https://github.com/DIAL-RPI/AnaXNet-Anatomy-Aware-CXR-Classification) | | [Annotation-efficient Cell Counting](https://miccai2021.org/openaccess/paperlinks/2021/09/01/054-Paper0766.html) | [Code](https://github.com/cvbmi-research/AnnotationEfficient-CellCounting) | | [ASC-Net: Adversarial-based Selective Network for Unsupervised Anomaly Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/055-Paper0734.html) | [Code](https://github.com/raun1/ASC-NET) | | [Asymmetric 3D Context Fusion for Universal Lesion Detection](https://miccai2021.org/openaccess/paperlinks/2021/09/01/056-Paper2033.html) | [Code](https://github.com/M3DV/AlignShift) | | [AtrialGeneral: Domain Generalization for Left Atrial Segmentation of Multi-Center LGE MRIs](https://miccai2021.org/openaccess/paperlinks/2021/09/01/058-Paper2098.html) | [Code](https://github.com/Marie0909/AtrialGeneral) | | [Attention-based Multi-scale Gated Recurrent Encoder with Novel Correlation Loss for COVID-19 Progression Prediction](https://miccai2021.org/openaccess/paperlinks/2021/09/01/060-Paper2496.html) | [Code](https://github.com/AishikKonwer95/Prog_Cxr_corrGRU) | | [Automatic Polyp Segmentation via Multi-scale Subtraction Network](https://miccai2021.org/openaccess/paperlinks/2021/09/01/064-Paper0305.html) | [Code](https://github.com/Xiaoqi-Zhao-DLUT/MSNet) | | [Automating Embryo Development Stage Detection in Time-Lapse Imaging with Synergic Loss and Temporal Learning](https://miccai2021.org/openaccess/paperlinks/2021/09/01/066-Paper1844.html) | [Code](https://github.com/llockhar/Embryo-Stage-Onset-Detection) | | [AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions](https://miccai2021.org/openaccess/paperlinks/2021/09/01/067-Paper0438.html) | [Code](https://github.com/donglaiw/AxonEM-challenge) | | [Balanced-MixUp for highly imbalanced medical image classification](https://miccai2021.org/openaccess/paperlinks/2021/09/01/068-Paper0936.html) | [Code](https://github.com/agaldran/balanced_mixup) | | [Bayesian Atlas Building with Hierarchical Priors for Subject-specific Regularization](https://miccai2021.org/openaccess/paperlinks/2021/09/01/069-Paper0705.html) | [Code](https://github.com/jw4hv/HierarchicalBayesianAtlasBuild) | | [Boundary-aware Transformers for Skin Lesion Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/074-Paper0478.html) | [Code](https://github.com/jcwang123/BA-Transformer) | | [Bounding Box Tightness Prior for Weakly Supervised Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/075-Paper0142.html) | [Code](https://github.com/wangjuan313/wsis-boundingbox) | | [BSDA-Net: A Boundary Shape and Distance Aware Joint Learning Framework for Segmenting and Classifying OCTA Images](https://miccai2021.org/openaccess/paperlinks/2021/09/01/076-Paper0895.html) | [Code](https://github.com/llmir/MultitaskOCTA) | | [CarveMix: A Simple Data Augmentation Method for Brain Lesion Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/082-Paper0448.html) | [Code](https://github.com/ZhangxinruBIT/CarveMix.git) | | [CataNet: Predicting remaining cataract surgery duration](https://miccai2021.org/openaccess/paperlinks/2021/09/01/083-Paper0340.html) | [Code](https://github.com/aimi-lab/catanet) | | [Categorical Relation-Preserving Contrastive Knowledge Distillation for Medical Image Classification](https://miccai2021.org/openaccess/paperlinks/2021/09/01/084-Paper0545.html) | [Code](https://github.com/hathawayxxh/CRCKD) | | [CCBANet: Cascading Context and Balancing Attention for Polyp Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/085-Paper2052.html) | [Code](https://github.com/ntcongvn/CCBANet) | | [Cell Detection from Imperfect Annotation by Pseudo Label Selection Using P-classification](https://miccai2021.org/openaccess/paperlinks/2021/09/01/086-Paper0874.html) | [Code](https://github.com/FujiiKazuma/CDFIAPLSUP.git) | | [Cell Detection in Domain Shift Problem Using Pseudo-Cell-Position Heatmap](https://miccai2021.org/openaccess/paperlinks/2021/09/01/087-Paper0505.html) | [Code](https://github.com/chohenu/Cell_Detection-MICCAI) | | [Cells are Actors: Social Network Analysis with Classical ML for SOTA Histology Image Classification](https://miccai2021.org/openaccess/paperlinks/2021/09/01/088-Paper1960.html) | [Code](https://github.com/mostafajahanifar/SNA_MICCAI21) | | [Chest Radiograph Disentanglement for COVID-19 Outcome Prediction](https://miccai2021.org/openaccess/paperlinks/2021/09/01/089-Paper2174.html) | [Code](https://github.com/cvlab-stonybrook/LSAE) | | [Class-Incremental Domain Adaptation with Smoothing and Calibration for Surgical Report Generation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/090-Paper0975.html) | [Code](https://github.com/XuMengyaAmy/CIDACaptioning/settings) | | [Coarse-to-fine Segmentation of Organs at Risk in Nasopharyngeal Carcinoma Radiotherapy](https://miccai2021.org/openaccess/paperlinks/2021/09/01/091-Paper1072.html) | [Code](https://github.com/DeepMedLab/Coarse-to-fine-segmentation) | | [Co-Generation and Segmentation for Generalized Surgical Instrument Segmentation on Unlabelled Data](https://miccai2021.org/openaccess/paperlinks/2021/09/01/092-Paper2511.html) | [Code](https://github.com/tajwarabraraleef/coSegGAN) | | [Colorectal Polyp Classification from White-light Colonoscopy Images via Domain Alignment](https://miccai2021.org/openaccess/paperlinks/2021/09/01/095-Paper1312.html) | [Code](https://github.com/qinwang-ai/PolypsAlign) | | [Combining 3D Image and Tabular Data via the Dynamic Affine Feature Map Transform](https://miccai2021.org/openaccess/paperlinks/2021/09/01/096-Paper0680.html) | [Code](https://github.com/ai-med/DAFT) | | [Combining Attention-based Multiple Instance Learning and Gaussian Processes for CT Hemorrhage Detection](https://miccai2021.org/openaccess/paperlinks/2021/09/01/097-Paper1046.html) | [Code](https://github.com/YunanWu2168/Att-based-MIL-and-GPMIL) | | [Comprehensive Importance-based Selective Regularization for Continual Segmentation Across Multiple Sites](https://miccai2021.org/openaccess/paperlinks/2021/09/01/098-Paper1125.html) | [Code](https://github.com/jingyzhang/CISR) | | [Conditional Deformable Image Registration with Convolutional Neural Network](https://miccai2021.org/openaccess/paperlinks/2021/09/01/099-Paper0422.html) | [Code](https://github.com/cwmok/Conditional_LapIRN) | | [Conditional GAN with an Attention-based Generator and a 3D Discriminator for 3D Medical Image Generation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/100-Paper1250.html) | [Code](https://github.com/EuijinMisp/ADESyn) | | [Constrained Contrastive Distribution Learning for Unsupervised Anomaly Detection and Localisation in Medical Images](https://miccai2021.org/openaccess/paperlinks/2021/09/01/104-Paper0405.html) | [Code](https://github.com/tianyu0207/CCD) | | [Continuous-Time Deep Glioma Growth Models](https://miccai2021.org/openaccess/paperlinks/2021/09/01/109-Paper0366.html) | [Code](https://github.com/MIC-DKFZ/deep-glioma-growth) | | [Contrastive Learning of Relative Position Regression for One-Shot Object Localization in 3D Medical Images](https://miccai2021.org/openaccess/paperlinks/2021/09/01/111-Paper1077.html) | [Code](https://github.com/HiLab-git/RPR-Loc) | | [Contrastive Learning with Continuous Proxy Meta-Data For 3D MRI Classification](https://miccai2021.org/openaccess/paperlinks/2021/09/01/112-Paper0382.html) | [Code](https://github.com/Duplums/yAwareContrastiveLearning) | | [Contrastive Pre-training and Representation Distillation for Medical Visual Question Answering Based on Radiology Images](https://miccai2021.org/openaccess/paperlinks/2021/09/01/113-Paper1235.html) | [Code](https://github.com/awenbocc/cprd) | | [Controllable cardiac synthesis via disentangled anatomy arithmetic](https://miccai2021.org/openaccess/paperlinks/2021/09/01/114-Paper0527.html) | [Code](https://github.com/vios-s/DAA-GAN) | | [Cooperative Training and Latent Space Data Augmentation for Robust Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/116-Paper0525.html) | [Code](https://github.com/cherise215/Cooperative_Training_and_Latent_Space_Data_Augmentation) | | [CoTr: Efficiently Bridging CNN and Transformer for 3D Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/118-Paper0537.html) | [Code](https://github.com/YtongXie/CoTr) | | [Cross-modal Attention for MRI and Ultrasound Volume Registration](https://miccai2021.org/openaccess/paperlinks/2021/09/01/122-Paper0642.html) | [Code](https://github.com/DIAL-RPI/Attention-Reg) | | [Data-driven mapping between functional connectomes using optimal transport](https://miccai2021.org/openaccess/paperlinks/2021/09/01/126-Paper1957.html) | [Code](https://github.com/dadashkarimi/functional-optimal-transport) | | [Deep J-Sense: Accelerated MRI Reconstruction via Unrolled Alternating Optimization](https://miccai2021.org/openaccess/paperlinks/2021/09/01/131-Paper1539.html) | [Code](https://github.com/utcsilab/deep-jsense) | | [Deep Neural Dynamic Bayesian Networks applied to EEG sleep spindles modeling](https://miccai2021.org/openaccess/paperlinks/2021/09/01/132-Paper1906.html) | [Code](https://github.com/carlosloza/DNDBN) | | [DeepMitral: Fully Automatic 3D Echocardiography Segmentation for Patient Specific Mitral Valve Modelling](https://miccai2021.org/openaccess/paperlinks/2021/09/01/138-Paper1457.html) | [Code](https://github.com/pcarnah/DeepMitral) | | [DeepOPG: Improving Orthopantomogram Finding Summarization with Weak Supervision](https://miccai2021.org/openaccess/paperlinks/2021/09/01/139-Paper1128.html) | [Code](https://github.com/stmharry/deepopg) | | [Deformed2Self: Self-Supervised Denoising for Dynamic Medical Imaging](https://miccai2021.org/openaccess/paperlinks/2021/09/01/141-Paper0313.html) | [Code](https://github.com/daviddmc/Deform2Self) | | [Depth Estimation for Colonoscopy Images with Self-supervised Learning from Videos](https://miccai2021.org/openaccess/paperlinks/2021/09/01/143-Paper0443.html) | [Code](https://github.com/ckLibra/Self-Supervised-Depth-Estimation-for-Colonoscopy) | | [Detecting Outliers with Poisson Image Interpolation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/146-Paper2129.html) | [Code](https://github.com/jemtan/PII) | | [Detecting when pre-trained nnU-Net models fail silently for Covid-19 lung lesion segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/147-Paper1378.html) | [Code](https://github.com/MECLabTUDA/Lifelong-nnUNet) | | [Developmental Stage Classification of Embryos Using Two-Stream Neural Network with Linear-Chain Conditional Random Field](https://miccai2021.org/openaccess/paperlinks/2021/09/01/150-Paper0437.html) | [Code](https://github.com/stlukyanenko/lc-crf-embryo-classification) | | [Distilling effective supervision for robust medical image segmentation with noisy labels](https://miccai2021.org/openaccess/paperlinks/2021/09/01/153-Paper2103.html) | [Code](https://github.com/shijial/PINT_code) | | [Distinguishing Differences Matters: Focal Contrastive Network for Peripheral Anterior Synechiae Recognition](https://miccai2021.org/openaccess/paperlinks/2021/09/01/154-Paper0254.html) | [Code](https://github.com/YifYang993/FC-Net) | | [Distortion Energy for Deep Learning-based Volumetric Finite Element Mesh Generation for Aortic Valves](https://miccai2021.org/openaccess/paperlinks/2021/09/01/155-Paper0247.html) | [Code](https://github.com/danpak94/Deep-Cardiac-Volumetric-Mesh) | | [Domain Composition and Attention for Unseen-Domain Generalizable Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/158-Paper1049.html) | [Code](https://github.com/HiLab-git/DCA-Net) | | [DT-MIL: Deformable Transformer for Multi-instance Learning on Histopathological Image](https://miccai2021.org/openaccess/paperlinks/2021/09/01/160-Paper0828.html) | [Code](https://github.com/yfzon/DT-MIL) | | [Dual-Consistency Semi-Supervised Learning with Uncertainty Quantification for COVID-19 Lesion Segmentation from CT Images](https://miccai2021.org/openaccess/paperlinks/2021/09/01/161-Paper1210.html) | [Code](https://github.com/poiuohke/UDC-Net) | | [Dual-Domain Adaptive-Scaling Non-Local Network for CT Metal Artifact Reduction](https://miccai2021.org/openaccess/paperlinks/2021/09/01/162-Paper0972.html) | [Code](https://github.com/zjk1988/DAN-Net) | | [Duo-SegNet: Adversarial Dual-Views for Semi-Supervised Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/163-Paper1113.html) | [Code](https://github.com/himashi92/Duo-SegNet) | | [Early Detection of Liver Fibrosis Using Graph Convolutional Networks](https://miccai2021.org/openaccess/paperlinks/2021/09/01/164-Paper0999.html) | [Code](https://github.com/mkatw/gnn-fibrosis) | | [Effective semantic segmentation in Cataract surgery: What matters most?](https://miccai2021.org/openaccess/paperlinks/2021/09/01/168-Paper1513.html) | [Code](https://github.com/RViMLab/MICCAI2021_Cataract_semantic_segmentation) | | [Efficient Global-Local Memory for Real-time Instrument Segmentation of Robotic Surgical Video](https://miccai2021.org/openaccess/paperlinks/2021/09/01/170-Paper2007.html) | [Code](https://github.com/jcwang123/DMNet) | | [Efficient neural network approximation of robust PCA for automated analysis of calcium imaging data](https://miccai2021.org/openaccess/paperlinks/2021/09/01/171-Paper1347.html) | [Code](https://github.com/NICALab/BEAR) | | [Efficient Semi-Supervised Gross Target Volume of Nasopharyngeal Carcinoma Segmentation via Uncertainty Rectified Pyramid Consistency](https://miccai2021.org/openaccess/paperlinks/2021/09/01/172-Paper0084.html) | [Code](https://github.com/HiLab-git/SSL4MIS) | | [EllipseNet: Anchor-Free Ellipse Detection for Automatic Cardiac Biometrics in Fetal Echocardiography](https://miccai2021.org/openaccess/paperlinks/2021/09/01/173-Paper1567.html) | [Code](https://git.openi.org.cn/capepoint/EllipseNet) | | [EMA: Auditing Data Removal from Trained Models](https://miccai2021.org/openaccess/paperlinks/2021/09/01/174-Paper1439.html) | [Code](https://github.com/Hazelsuko07/EMA) | | [EMDQ-SLAM: Real-time High-resolution Reconstruction of Soft Tissue Surface from Stereo Laparoscopy Videos](https://miccai2021.org/openaccess/paperlinks/2021/09/01/175-Paper1969.html) | [Code](https://github.com/haoyinzhou/EMDQ_C) | | [End-to-end Ultrasound Frame to Volume Registration](https://miccai2021.org/openaccess/paperlinks/2021/09/01/178-Paper0585.html) | [Code](https://github.com/DIAL-RPI/FVR-Net) | | [Equivariant Filters for Efficient Tracking in 3D Imaging](https://miccai2021.org/openaccess/paperlinks/2021/09/01/181-Paper2444.html) | [Code](https://github.com/dcmoyer/rxfm-net) | | [Explaining COVID-19 and Thoracic Pathology Model Predictions by Identifying Informative Input Features](https://miccai2021.org/openaccess/paperlinks/2021/09/01/185-Paper0328.html) | [Code](https://github.com/CAMP-eXplain-AI/CheXplain-IBA) | | [Exploring the Functional Difference of Gyri/Sulci via Hierarchical Interpretable Autoencoder](https://miccai2021.org/openaccess/paperlinks/2021/09/01/186-Paper2116.html) | [Code](https://github.com/liniez/HIAE/) | | [Federated Semi-supervised Medical Image Classification via Inter-client Relation Matching](https://miccai2021.org/openaccess/paperlinks/2021/09/01/192-Paper0299.html) | [Code](https://github.com/liuquande/FedIRM) | | [Federated Whole Prostate Segmentation in MRI with Personalized Neural Architectures](https://miccai2021.org/openaccess/paperlinks/2021/09/01/193-Paper1531.html) | [Code](https://monai.io) | | [FedPerl: Semi-Supervised Peer Learning for Skin Lesion Classification](https://miccai2021.org/openaccess/paperlinks/2021/09/01/194-Paper1236.html) | [Code](https://github.com/tbdair/FedPerlV1.0) | | [Few Trust Data Guided Annotation Refinement for Upper Gastrointestinal Anatomy Recognition](https://miccai2021.org/openaccess/paperlinks/2021/09/01/195-Paper2004.html) | [Code](https://github.com/Liian/Few-trust-data-guided-annotation-refinement) | | [Few-Shot Domain Adaptation with Polymorphic Transformers](https://miccai2021.org/openaccess/paperlinks/2021/09/01/196-Paper0106.html) | [Code](https://github.com/askerlee/segtran) | | [Fighting Class Imbalance with Contrastive Learning](https://miccai2021.org/openaccess/paperlinks/2021/09/01/198-Paper1234.html) | [Code](https://github.com/YMarrakchi/CICL) | | [FoldIt: Haustral Folds Detection and Segmentation in Colonoscopy Videos](https://miccai2021.org/openaccess/paperlinks/2021/09/01/201-Paper1000.html) | [Code](https://github.com/nadeemlab/CEP) | | [From Brain to Body: Learning Low-Frequency Respiration and Cardiac Signals from fMRI Dynamics](https://miccai2021.org/openaccess/paperlinks/2021/09/01/202-Paper0393.html) | [Code](https://github.com/neurdylab/deep-physio-recon) | | [Functional Magnetic Resonance Imaging data augmentation through conditional ICA](https://miccai2021.org/openaccess/paperlinks/2021/09/01/205-Paper2229.html) | [Code](https://github.com/BTajini/augfmri) | | [Generalised Super Resolution for Quantitative MRI Using Self-Supervised Mixture of Experts](https://miccai2021.org/openaccess/paperlinks/2021/09/01/206-Paper0200.html) | [Code](https://github.com/hongxiangharry/SS-MoE) | | [Generator Versus Segmentor: Pseudo-healthy Synthesis](https://miccai2021.org/openaccess/paperlinks/2021/09/01/209-Paper0556.html) | [Code](https://github.com/Au3C2/Generator-Versus-Segmentor) | | [Hierarchical graph pathomic network for progression free survival prediction](https://miccai2021.org/openaccess/paperlinks/2021/09/01/218-Paper1030.html) | [Code](https://github.com/zcwang0702/HGPN) | | [Hierarchical Phenotyping and Graph Modeling of Spatial Architecture in Lymphoid Neoplasms](https://miccai2021.org/openaccess/paperlinks/2021/09/01/219-Paper0415.html) | [Code](https://github.com/WuLabMDA/HierarchicalGraphModeling) | | [High-particle simulation of Monte-Carlo dose distribution with 3D ConvLSTMs](https://miccai2021.org/openaccess/paperlinks/2021/09/01/222-Paper1512.html) | [Code](https://git.io/JcbxD) | | [High-resolution segmentation of lumbar vertebrae from conventional thick slice MRI](https://miccai2021.org/openaccess/paperlinks/2021/09/01/224-Paper2142.html) | [Code](https://github.com/FedeTure/ReconNet) | | [HRENet: A Hard Region Enhancement Network for Polyp Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/225-Paper1769.html) | [Code](https://github.com/CathySH/HRENet) | | [hSDB-instrument: Instrument Localization Database for Laparoscopic and Robotic Surgeries](https://miccai2021.org/openaccess/paperlinks/2021/09/01/226-Paper2510.html) | [Code](https://hsdb-instrument.github.io/) | | [Hybrid graph convolutional neural networks for anatomical segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/228-Paper1953.html) | [Code](https://github.com/ngaggion/HybridGNet) | | [Imbalance-Aware Self-Supervised Learning for 3D Radiomic Representations](https://miccai2021.org/openaccess/paperlinks/2021/09/01/234-Paper0316.html) | [Code](https://github.com/hongweilibran/imbalanced-SSL) | | [Implicit field learning for unsupervised anomaly detection in medical images](https://miccai2021.org/openaccess/paperlinks/2021/09/01/235-Paper1188.html) | [Code](https://github.com/snavalm/ifl_unsup_anom_det) | | [Implicit Neural Distance Representation for Unsupervised and Supervised Classification of Complex Anatomies](https://miccai2021.org/openaccess/paperlinks/2021/09/01/236-Paper0939.html) | [Code](https://github.com/kristineaajuhl/Implicit-Neural-Distance-Representation-of-Complex-Anatomie) | | [Improved Brain Lesion Segmentation with Anatomical Priors from Healthy Subjects](https://miccai2021.org/openaccess/paperlinks/2021/09/01/237-Paper0445.html) | [Code](https://github.com/lchdl/NLL_anomaly_detection) | | [Improving Generalizability in Limited-Angle CT Reconstruction with Sinogram Extrapolation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/238-Paper0413.html) | [Code](https://github.com/mars11121/EPNet) | | [Improving the Explainability of Skin Cancer Diagnosis Using CBIR](https://miccai2021.org/openaccess/paperlinks/2021/09/01/241-Paper2437.html) | [Code](https://github.com/catarina-barata/CBIR_Explainability_Skin_Cancer) | | [InDuDoNet: An Interpretable Dual Domain Network for CT Metal Artifact Reduction](https://miccai2021.org/openaccess/paperlinks/2021/09/01/244-Paper0432.html) | [Code](https://github.com/hongwang01/InDuDoNet) | | [Instance-based Vision Transformer for Subtyping of Papillary Renal Cell Carcinoma in Histopathological Image](https://miccai2021.org/openaccess/paperlinks/2021/09/01/246-Paper2099.html) | [Code](https://github.com/ZeyuGaoAi/Instance_based_Vision_Transformer) | | [Inter Extreme Points Geodesics for End-to-End Weakly Supervised Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/248-Paper1754.html) | [Code](https://github.com/ReubenDo/InExtremIS) | | [Interactive smoothing parameter optimization in DBT Reconstruction using Deep learning](https://miccai2021.org/openaccess/paperlinks/2021/09/01/250-Paper0425.html) | [Code](https://github.com/PranjalSahu/InteractiveSmoothingDBT) | | [Interpretable gender classification from retinal fundus images using BagNets](https://miccai2021.org/openaccess/paperlinks/2021/09/01/253-Paper1243.html) | [Code](https://github.com/berenslab/genderBagNets) | | [Intra-operative Update of Boundary Conditions for Patient-specific Surgical Simulation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/256-Paper2314.html) | [Code](https://gitlab.com/altairLab/banet) | | [I-SECRET: Importance-guided fundus image enhancement via semi-supervised contrastive constraining](https://miccai2021.org/openaccess/paperlinks/2021/09/01/258-Paper0988.html) | [Code](https://github.com/QtacierP/ISECRET) | | [Joint Motion Correction and Super Resolution for Cardiac Segmentation via Latent Optimisation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/259-Paper0821.html) | [Code](https://github.com/shuowang26/SRHeart) | | [Joint Optimization of Hadamard Sensing and Reconstruction in Compressed Sensing Fluorescence Microscopy](https://miccai2021.org/openaccess/paperlinks/2021/09/01/260-Paper0475.html) | [Code](https://github.com/alanqrwang/csfm) | | [Label-Free Physics-Informed Image Sequence Reconstruction with Disentangled Spatial-Temporal Modeling](https://miccai2021.org/openaccess/paperlinks/2021/09/01/265-Paper1581.html) | [Code](https://github.com/john-x-jiang/phy_geo) | | [Labels-set Loss Functions for Partial Supervision: Application to Fetal Brain 3D MRI Parcellation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/266-Paper1955.html) | [Code](https://github.com/LucasFidon/fetal-brain-segmentation-partial-supervision-miccai21) | | [LambdaUNet: 2.5D Stroke Lesion Segmentation of Diffusion-weighted MR Images](https://miccai2021.org/openaccess/paperlinks/2021/09/01/267-Paper2447.html) | [Code](https://github.com/YanglanOu/LambdaUNet) | | [Learnable Oriented-Derivative Network for Polyp Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/270-Paper2375.html) | [Code](https://github.com/midsdsy/LOD-Net) | | [Learning 4D Infant Cortical Surface Atlas with Unsupervised Spherical Networks](https://miccai2021.org/openaccess/paperlinks/2021/09/01/272-Paper2149.html) | [Code](https://github.com/zhaofenqiang/GroupwiseReg) | | [Learning to Address Intra-segment Misclassification in Retinal Imaging](https://miccai2021.org/openaccess/paperlinks/2021/09/01/279-Paper1516.html) | [Code](https://github.com/rmaphoh/Learning-AVSegmentation) | | [Learning Unsupervised Parameter-specific Affine Transformation for Medical Images Registration](https://miccai2021.org/openaccess/paperlinks/2021/09/01/281-Paper0337.html) | [Code](https://github.com/xuuuuuuchen/PASTA) | | [Learning Whole-Slide Segmentation from Inexact and Incomplete Labels using Tissue Graphs](https://miccai2021.org/openaccess/paperlinks/2021/09/01/283-Paper1893.html) | [Code](https://github.com/histocartography/seg-gini) | | [Learning-based attenuation quantification in abdominal ultrasound](https://miccai2021.org/openaccess/paperlinks/2021/09/01/285-Paper0639.html) | [Code](https://github.com/MyeonggeeKim/Learning-based-attenuation-quantification-in-abdominal-ultrasound) | | [LensID: A CNN-RNN-Based Framework Towards Lens Irregularity Detection in Cataract Surgery Videos](https://miccai2021.org/openaccess/paperlinks/2021/09/01/286-Paper0903.html) | [Code](https://github.com/Negin-Ghamsarian/AdaptNet-MICCAI2021) | | [Lesion-based Contrastive Learning for Diabetic Retinopathy Grading from Fundus Images](https://miccai2021.org/openaccess/paperlinks/2021/09/01/288-Paper0730.html) | [Code](https://github.com/YijinHuang/Lesion-based-Contrastive-Learning) | | [LG-Net: Lesion Gate Network for Multiple Sclerosis Lesion Inpainting](https://miccai2021.org/openaccess/paperlinks/2021/09/01/290-Paper0533.html) | [Code](https://github.com/jackjacktang/LG-Net) | | [LIFE: A Generalizable Autodidactic Pipeline for 3D OCT-A Vessel Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/291-Paper1556.html) | [Code](https://github.com/DeweiHu/LIFE) | | [Linear Prediction Residual for Efficient Diagnosis of Parkinson's Disease from Gait](https://miccai2021.org/openaccess/paperlinks/2021/09/01/292-Paper2340.html) | [Code](https://github.com/devalab/parkinsonsfromgait) | | [Local Morphological Measures Confirm that Folding within Small Partitions of the Human Cortex Follows Universal Scaling Law](https://miccai2021.org/openaccess/paperlinks/2021/09/01/293-Paper1822.html) | [Code](https://github.com/KarolineLeiberg/folding_pointwise) | | [Longitudinal Correlation Analysis for Decoding Multi-Modal Brain Development](https://miccai2021.org/openaccess/paperlinks/2021/09/01/295-Paper0761.html) | [Code](https://github.com/QingyuZhao/LCA) | | [Longitudinal Quantitative Assessment of COVID-19 Infection Progression from Chest CTs](https://miccai2021.org/openaccess/paperlinks/2021/09/01/296-Paper0346.html) | [Code](https://github.com/lilygoli/longitudinalCOVID) | | [Longitudinal self-supervision to disentangle inter-patient variability from disease progression](https://miccai2021.org/openaccess/paperlinks/2021/09/01/297-Paper1497.html) | [Code](https://github.com/RaphaelCouronne/longitudinal_autoencoder) | | [LuMiRa: An Integrated Lung Deformation Atlas and 3D-CNN model of Infiltrates for COVID-19 Prognosis](https://miccai2021.org/openaccess/paperlinks/2021/09/01/298-Paper2540.html) | [Code](https://github.com/amogh3892/LuMiRa-An-Integrated-Lung-Deformation-Atlas-and-3D-CNN-model-of-Infiltrates-for-COVID-19-Prognosis.git) | | [MASC-Units: Training Oriented Filters for Segmenting Curvilinear Structures](https://miccai2021.org/openaccess/paperlinks/2021/09/01/300-Paper1048.html) | [Code](https://github.com/Zewen-Liu/MASC_algorithm) | | [MBFF-Net: Multi-Branch Feature Fusion Network for Carotid Plaque Segmentation in Ultrasound](https://miccai2021.org/openaccess/paperlinks/2021/09/01/301-Paper0934.html) | [Code](https://github.com/mishiyu/MBFF) | | [Medical Transformer: Gated Axial-Attention for Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/304-Paper0116.html) | [Code](https://github.com/jeya-maria-jose/Medical-Transformer) | | [Memory-efficient Learning for High-dimensional MRI Reconstruction](https://miccai2021.org/openaccess/paperlinks/2021/09/01/305-Paper2251.html) | [Code](https://github.com/mikgroup/MEL_MRI) | | [MIL-VT: Multiple Instance Learning Enhanced Vision Transformer for Fundus Image Classification](https://miccai2021.org/openaccess/paperlinks/2021/09/01/310-Paper0776.html) | [Code](https://github.com/greentreeys/MIL-VT) | | [Modality Completion via Gaussian Process Prior Variational Autoencoders for Multi-Modal Glioma Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/311-Paper1391.html) | [Code](https://github.com/hamghalam/MGP-VAE) | | [Modality-aware Mutual Learning for Multi-modal Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/312-Paper1888.html) | [Code](https://github.com/YaoZhang93/MAML) | | [MorphSet: Improving Renal Histopathology Case Assessment Through Learned Prognostic Vectors](https://miccai2021.org/openaccess/paperlinks/2021/09/01/313-Paper2299.html) | [Code](https://github.com/pcicales/MICCAI_2021_aglom) | | [MouseGAN: GAN-Based Multiple MRI Modalities Synthesis and Segmentation for Mouse Brain Structures](https://miccai2021.org/openaccess/paperlinks/2021/09/01/315-Paper1374.html) | [Code](https://github.com/yu56500/MouseGAN) | | [M-SEAM-NAM: Multi-instance Self-supervised Equivalent Attention Mechanism with Neighborhood Affinity Module for Double Weakly Supervised Segmentation of COVID-19](https://miccai2021.org/openaccess/paperlinks/2021/09/01/317-Paper0251.html) | [Code](https://github.com/TangWen920812/M-SEAM-NAM) | | [MT-UDA: Towards Unsupervised Cross-Modality Medical Image Segmentation with Limited Source Labels](https://miccai2021.org/openaccess/paperlinks/2021/09/01/318-Paper0678.html) | [Code](https://github.com/jacobzhaoziyuan/MT-UDA) | | [Multi-Compound Transformer for Accurate Biomedical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/319-Paper0786.html) | [Code](https://github.com/JiYuanFeng/MCTrans) | | [Multi-Contrast MRI Super-Resolution via a Multi-Stage Integration Network](https://miccai2021.org/openaccess/paperlinks/2021/09/01/320-Paper0539.html) | [Code](https://github.com/chunmeifeng/MINet) | | [Multi-frame Attention Network for Left Ventricle Segmentation in 3D Echocardiography](https://miccai2021.org/openaccess/paperlinks/2021/09/01/321-Paper0822.html) | [Code](https://github.com/sa867/multiframe_attention_3d_echo) | | [Multi-frame Collaboration for Effective Endoscopic Video Polyp Detection via Spatial-Temporal Feature Transformation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/322-Paper0906.html) | [Code](https://github.com/lingyunwu14/STFT) | | [Multi-modal Multi-instance Learning using Weakly Correlated Histopathological Images and Tabular Clinical Information](https://miccai2021.org/openaccess/paperlinks/2021/09/01/326-Paper0937.html) | [Code](https://github.com/yfzon/Multi-modal-Multi-instance-Learning) | | [Multiple Instance Learning with Auxiliary Task Weighting for Multiple Myeloma Classification](https://miccai2021.org/openaccess/paperlinks/2021/09/01/331-Paper2077.html) | [Code](https://github.com/biomedia-mira/atmil) | | [Multiple Meta-model Quantifying for Medical Visual Question Answering](https://miccai2021.org/openaccess/paperlinks/2021/09/01/332-Paper0066.html) | [Code](https://github.com/aioz-ai/MICCAI21_MMQ) | | [Multi-StyleGAN: Towards Image-Based Simulation of Time-Lapse Live-Cell Microscopy](https://miccai2021.org/openaccess/paperlinks/2021/09/01/335-Paper1677.html) | [Code](https://git.rwth-aachen.de/bcs/projects/tp/multi-stylegan) | | [Multi-view analysis of unregistered medical images using cross-view transformers](https://miccai2021.org/openaccess/paperlinks/2021/09/01/337-Paper1007.html) | [Code](https://vantulder.net/code/2021/miccai-transformers/) | | [Neighbor Matching for Semi-supervised Learning](https://miccai2021.org/openaccess/paperlinks/2021/09/01/339-Paper1138.html) | [Code](https://github.com/renzhenwang/neighbor-matching) | | [nnDetection: A Self-configuring Method for Medical Object Detection](https://miccai2021.org/openaccess/paperlinks/2021/09/01/341-Paper1836.html) | [Code](https://github.com/MIC-DKFZ/nnDetection) | | [Noisy Labels are Treasure: Mean-Teacher-Assisted Confident Learning for Hepatic Vessel Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/343-Paper0008.html) | [Code](https://github.com/lemoshu/MTCL) | | [Non-parametric vignetting correction for sparse spatial transcriptomics images](https://miccai2021.org/openaccess/paperlinks/2021/09/01/345-Paper1460.html) | [Code](https://github.com/BoveyRao/Non-parametric-vc-for-sparse-st) | | [Nuclei Grading of Clear Cell Renal Cell Carcinoma in Histopathological Image by Composite High-Resolution Network](https://miccai2021.org/openaccess/paperlinks/2021/09/01/346-Paper0136.html) | [Code](https://github.com/ZeyuGaoAi/Composite_High_Resolution_Network) | | [NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale](https://miccai2021.org/openaccess/paperlinks/2021/09/01/347-Paper0436.html) | [Code](https://github.com/zudi-lin/pytorch_connectomics) | | [Observational Supervision for Medical Image Classification using Gaze Data](https://miccai2021.org/openaccess/paperlinks/2021/09/01/348-Paper1584.html) | [Code](https://github.com/HazyResearch/observational) | | [OLVA: Optimal Latent Vector Alignment for Unsupervised Domain Adaptation in Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/349-Paper1751.html) | [Code](https://github.com/DawoodChanti/OLVA) | | [On the relationship between calibrated predictors and unbiased volume estimation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/350-Paper2115.html) | [Code](https://github.com/tpopordanoska/calibration_and_bias) | | [One-Shot Medical Landmark Detection](https://miccai2021.org/openaccess/paperlinks/2021/09/01/351-Paper1110.html) | [Code](https://github.com/ICT-MIRACLE-lab/Oneshot_landmark_detection) | | [OperA: Attention-Regularized Transformers for Surgical Phase Recognition](https://miccai2021.org/openaccess/paperlinks/2021/09/01/352-Paper0235.html) | [Code](https://github.com/tobiascz/OperA) | | [Orthogonal Ensemble Networks for Biomedical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/354-Paper0969.html) | [Code](https://github.com/agosl/Orthogonal_Ensemble_Networks) | | [Over-and-Under Complete Convolutional RNN for MRI Reconstruction](https://miccai2021.org/openaccess/paperlinks/2021/09/01/355-Paper0096.html) | [Code](https://github.com/guopengf/OUCR) | | [OXnet: Deep Omni-supervised Thoracic Disease Detection from Chest X-rays](https://miccai2021.org/openaccess/paperlinks/2021/09/01/356-Paper0301.html) | [Code](https://github.com/LLYXC/OXnet) | | [PAC Bayesian Performance Guarantees for (Stochastic) Deep Networks in Medical Imaging](https://miccai2021.org/openaccess/paperlinks/2021/09/01/357-Paper2481.html) | [Code](https://github.com/anthonysicilia/PAC-Bayes-In-Medical-Imaging) | | [Patch-Free 3D Medical Image Segmentation Driven by Super-Resolution Technique and Self-Supervised Guidance](https://miccai2021.org/openaccess/paperlinks/2021/09/01/361-Paper0315.html) | [Code](https://github.com/Dootmaan/PFSeg) | | [Patient-specific virtual spine straightening and vertebra inpainting: An automatic framework for osteoplasty planning](https://miccai2021.org/openaccess/paperlinks/2021/09/01/362-Paper1766.html) | [Code](https://github.com/christinab12/bone-cement-injection-planning) | | [Perceptual Quality Assessment of Chest Radiograph](https://miccai2021.org/openaccess/paperlinks/2021/09/01/364-Paper1644.html) | [Code](https://github.com/ICT-MIRACLE-lab/CXIQ) | | [Personalized Retrogress-Resilient Framework for Real-World Medical Federated Learning](https://miccai2021.org/openaccess/paperlinks/2021/09/01/368-Paper1293.html) | [Code](https://github.com/CityU-AIM-Group/PRR-FL) | | [Phase-independent Latent Representation for Cardiac Shape Analysis](https://miccai2021.org/openaccess/paperlinks/2021/09/01/369-Paper1929.html) | [Code](https://github.com/Inria-Asclepios/mcvc) | | [Point-Unet: A Context-aware Point-based Neural Network for Volumetric Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/370-Paper2053.html) | [Code](https://github.com/VinAIResearch/Point-Unet) | | [Positional Contrastive Learning for Volumetric Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/372-Paper1432.html) | [Code](https://github.com/dewenzeng/positional_cl) | | [Progressively Normalized Self-Attention Network for Video Polyp Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/378-Paper0320.html) | [Code](https://github.com/GewelsJI/PNS-Net) | | [Projection-wise Disentangling for Fair and Interpretable Representation Learning: Application to 3D Facial Shape Analysis](https://miccai2021.org/openaccess/paperlinks/2021/09/01/379-Paper1510.html) | [Code](https://github.com/tsingmessage/projection_wise_disentangling_FRL) | | [Prototypical Interaction Graph for Unsupervised Domain Adaptation in Surgical Instrument Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/381-Paper1809.html) | [Code](https://github.com/CityU-AIM-Group/SePIG) | | [Q-space Conditioned Translation Networks for Directional Synthesis of Diffusion Weighted Images from Multi-modal Structural MRI](https://miccai2021.org/openaccess/paperlinks/2021/09/01/383-Paper2533.html) | [Code](https://github.com/mengweiren/q-space-conditioned-dwi-synthesis) | | [Quality-Aware Memory Network for Interactive Volumetric Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/384-Paper0663.html) | [Code](https://github.com/0liliulei/Mem3D) | | [Quantifying structural connectivity in brain tumor patients](https://miccai2021.org/openaccess/paperlinks/2021/09/01/385-Paper2484.html) | [Code](https://github.com/vctorwei/TumorBrainConnectivity) | | [Quantitative Assessments for Ultrasound Probe Calibration](https://miccai2021.org/openaccess/paperlinks/2021/09/01/386-Paper2117.html) | [Code](https://github.com/chene/ARQOPUS) | | [Rapid treatment planning for low-dose-rate prostate brachytherapy with TP-GAN](https://miccai2021.org/openaccess/paperlinks/2021/09/01/389-Paper2581.html) | [Code](https://github.com/tajwarabraraleef/TP-GAN) | | [RATCHET: Medical Transformer for Chest X-ray Diagnosis and Reporting](https://miccai2021.org/openaccess/paperlinks/2021/09/01/390-Paper1026.html) | [Code](http://github.com/farrell236/RATCHET) | | [Reciprocal Learning for Semi-supervised Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/393-Paper0149.html) | [Code](https://github.com/XYZach/RLSSS) | | [Recurrent Multigraph Integrator Network for Predicting the Evolution of Population-Driven Brain Connectivity Templates](https://miccai2021.org/openaccess/paperlinks/2021/09/01/394-Paper1171.html) | [Code](https://github.com/basiralab/ReMI-Net) | | [Refined Local-imbalance-based Weight for Airway Segmentation in CT](https://miccai2021.org/openaccess/paperlinks/2021/09/01/396-Paper1200.html) | [Code](https://github.com/haozheng-sjtu/Local-imbalance-based-Weight) | | [ReSGAN: Intracranial Hemorrhage Segmentation with Residuals of Synthetic Brain CT Scans](https://miccai2021.org/openaccess/paperlinks/2021/09/01/400-Paper1178.html) | [Code](https://github.com/miikatoi/ReSGAN-CTICH) | | [Residual Feedback Network for Breast Lesion Segmentation in Ultrasound Image](https://miccai2021.org/openaccess/paperlinks/2021/09/01/401-Paper1418.html) | [Code](https://github.com/mniwk/RF-Net) | | [Rethinking Ultrasound Augmentation: A Physics-Inspired Approach](https://miccai2021.org/openaccess/paperlinks/2021/09/01/402-Paper2428.html) | [Code](https://github.com/mariatirindelli/UltrasoundAugmentation) | | [Revisiting iterative highly efficient optimisation schemes in medical image registration](https://miccai2021.org/openaccess/paperlinks/2021/09/01/405-Paper2461.html) | [Code](https://github.com/lasseha/iter_lbp) | | [RibSeg Dataset and Strong Point Cloud Baselines for Rib Segmentation from CT Scans](https://miccai2021.org/openaccess/paperlinks/2021/09/01/406-Paper2031.html) | [Code](https://github.com/M3DV/RibSeg) | | [Rician noise estimation for 3D Magnetic Resonance Images based on Benford's Law](https://miccai2021.org/openaccess/paperlinks/2021/09/01/407-Paper1471.html) | [Code](https://github.com/icai-uma/RicianNoiseEst_3DMRI_BenfordsLaw.git) | | [RLP-Net: Recursive Light Propagation Network for 3-D Virtual Refocusing](https://miccai2021.org/openaccess/paperlinks/2021/09/01/408-Paper0632.html) | [Code](https://github.com/NICALab/rlpnet) | | [RV-GAN: Segmenting Retinal Vascular Structure in Fundus Photographs using a Novel Multi-scale Generative Adversarial Network](https://miccai2021.org/openaccess/paperlinks/2021/09/01/409-Paper0464.html) | [Code](https://github.com/SharifAmit/RVGAN) | | [Scalable, Axiomatic Explanations of Deep Alzheimer's Diagnosis from Heterogeneous Data](https://miccai2021.org/openaccess/paperlinks/2021/09/01/414-Paper0673.html) | [Code](https://github.com/ai-med/SVEHNN) | | [Selective Learning from External Data for CT Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/418-Paper1258.html) | [Code](https://github.com/YouyiSong/Codes-for-Selective-Learning) | | [Self-Supervised Correction Learning for Semi-Supervised Biomedical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/421-Paper0867.html) | [Code](https://github.com/ReaFly/SemiMedSeg) | | [Self-Supervised Learning for MRI Reconstruction with a Parallel Network Training Framework](https://miccai2021.org/openaccess/paperlinks/2021/09/01/423-Paper1698.html) | [Code](https://github.com/chenhu96/Self-Supervised-MRI-Reconstruction) | | [Self-supervised Lesion Change Detection and Localisation in Longitudinal Multiple Sclerosis Brain Imaging](https://miccai2021.org/openaccess/paperlinks/2021/09/01/424-Paper1037.html) | [Code](https://github.com/toson87/MSChangeDetection) | | [Self-Supervised Longitudinal Neighbourhood Embedding](https://miccai2021.org/openaccess/paperlinks/2021/09/01/425-Paper0399.html) | [Code](https://github.com/ouyangjiahong/longitudinal-neighbourhood-embedding) | | [Self-Supervised Multi-Modal Alignment For Whole Body Medical Imaging](https://miccai2021.org/openaccess/paperlinks/2021/09/01/426-Paper0538.html) | [Code](https://github.com/rwindsor1/biobank-self-supervised-alignment) | | [Self-Supervised Vessel Enhancement Using Flow-Based Consistencies](https://miccai2021.org/openaccess/paperlinks/2021/09/01/427-Paper1526.html) | [Code](https://github.com/batmanlab/vessel-flow-consistency-ssl) | | [Self-supervised visual representation learning for histopathological images](https://miccai2021.org/openaccess/paperlinks/2021/09/01/428-Paper0322.html) | [Code](https://github.com/easonyang1996/CS-CO) | | [Semi-supervised Cell Detection in Time-lapse Images Using Temporal Consistency](https://miccai2021.org/openaccess/paperlinks/2021/09/01/431-Paper0502.html) | [Code](https://github.com/naivete5656/SCDTC) | | [Semi-supervised Contrastive Learning for Label-efficient Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/432-Paper1905.html) | [Code](https://github.com/xhu248/semi_cotrast_seg) | | [Semi-supervised Meta-learning with Disentanglement for Domain-generalised Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/435-Paper0081.html) | [Code](https://github.com/vios-s/DGNet) | | [Semi-Supervised Unpaired Multi-Modal Learning for Label-Efficient Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/436-Paper0915.html) | [Code](https://github.com/nusdbsystem/SSUMML) | | [Sequential Gaussian Process Regression for Simultaneous Pathology Detection and Shape Reconstruction](https://miccai2021.org/openaccess/paperlinks/2021/09/01/437-Paper1279.html) | [Code](https://github.com/unibas-gravis/sequential-gpmm) | | [Sequential Lung Nodule Synthesis using Attribute-guided Generative Adversarial Networks](https://miccai2021.org/openaccess/paperlinks/2021/09/01/439-Paper1814.html) | [Code](https://github.com/SojeongCheon/LSTM_GAN) | | [Shallow Attention Network for Polyp Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/441-Paper2335.html) | [Code](https://github.com/weijun88/SANet) | | [Sharpening Local Interpretable Model-agnostic Explanations for Histopathology: Improved Understandability and Reliability](https://miccai2021.org/openaccess/paperlinks/2021/09/01/442-Paper2380.html) | [Code](https://github.com/maragraziani/MICCAI2021_replicate) | | [SimTriplet: Simple Triplet Representation Learning with a Single GPU](https://miccai2021.org/openaccess/paperlinks/2021/09/01/443-Paper0569.html) | [Code](https://github.com/hrlblab/SimTriplet) | | [Simultaneous Alignment and Surface Regression Using Hybrid 2D-3D Networks for 3D Coherent Layer Segmentation of Retina OCT Images](https://miccai2021.org/openaccess/paperlinks/2021/09/01/444-Paper1968.html) | [Code](https://github.com/ccarliu/Retinal-OCT-LayerSeg.git) | | [Sli2Vol: Annotate a 3D Volume from a Single Slice with Self-Supervised Learning](https://miccai2021.org/openaccess/paperlinks/2021/09/01/445-Paper0395.html) | [Code](https://github.com/pakheiyeung/Sli2Vol) | | [Source-Free Domain Adaptive Fundus Image Segmentation with Denoised Pseudo-Labeling](https://miccai2021.org/openaccess/paperlinks/2021/09/01/446-Paper0715.html) | [Code](https://github.com/cchen-cc/SFDA-DPL) | | [Spine-Transformers: Vertebra Detection and Localization in Arbitrary Field-of-View Spine CT with Transformers](https://miccai2021.org/openaccess/paperlinks/2021/09/01/451-Paper0853.html) | [Code](https://github.com/gloriatao/Spine-Transformers) | | [STRESS: Super-Resolution for Dynamic Fetal MRI using Self-Supervised Learning](https://miccai2021.org/openaccess/paperlinks/2021/09/01/455-Paper0208.html) | [Code](https://github.com/daviddmc/STRESS) | | [Structure-Preserving Multi-Domain Stain Color Augmentation using Style-Transfer with Disentangled Representations](https://miccai2021.org/openaccess/paperlinks/2021/09/01/456-Paper1521.html) | [Code](https://github.com/sophiajw/HistAuGAN) | | [Study Group Learning: Improving Retinal Vessel Segmentation Trained with Noisy Labels](https://miccai2021.org/openaccess/paperlinks/2021/09/01/457-Paper0188.html) | [Code](https://github.com/SHI-Labs/SGL-Retinal-Vessel-Segmentation) | | [Superpixel-guided Iterative Learning from Noisy Labels for Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/460-Paper1575.html) | [Code](https://github.com/gaozhitong/SP_guided_Noisy_Label_Seg) | | [SurgeonAssist-Net: Towards Context-Aware Head-Mounted Display-Based Augmented Reality for Surgical Guidance](https://miccai2021.org/openaccess/paperlinks/2021/09/01/463-Paper1825.html) | [Code](https://github.com/doughtmw/surgeon-assist-net) | | [Surgical Instruction Generation with Transformers](https://miccai2021.org/openaccess/paperlinks/2021/09/01/464-Paper1509.html) | [Code](https://github.com/lulucelia/surgical-instruction) | | [Surgical Workflow Anticipation using Instrument Interaction](https://miccai2021.org/openaccess/paperlinks/2021/09/01/465-Paper0849.html) | [Code](https://github.com/Flaick/Surgical-Workflow-Anticipation) | | [Survival Prediction Based on Histopathology Imaging and Clinical Data: A Novel, Whole Slide CNN Approach ](https://miccai2021.org/openaccess/paperlinks/2021/09/01/466-Paper0745.html) | [Code](https://github.com/saloniagarwal0403/SSCNN) | | [Synthesizing Multi-Tracer PET Images for Alzheimer's Disease Patients using a 3D Unified Anatomy-aware Cyclic Adversarial Network](https://miccai2021.org/openaccess/paperlinks/2021/09/01/470-Paper0181.html) | [Code](https://github.com/bbbbbbzhou/UCAN) | | [TarGAN: Target-Aware Generative Adversarial Networks for Multi-modality Medical Image Translation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/471-Paper0121.html) | [Code](https://github.com/cs-xiao/TarGAN) | | [Task Transformer Network for Joint MRI Reconstruction and Super-Resolution](https://miccai2021.org/openaccess/paperlinks/2021/09/01/474-Paper1223.html) | [Code](https://github.com/chunmeifeng/T2Net) | | [Task-Oriented Low-Dose CT Image Denoising](https://miccai2021.org/openaccess/paperlinks/2021/09/01/475-Paper1982.html) | [Code](https://github.com/DIAL-RPI/Task-Oriented-CT-Denoising_TOD-Net) | | [TEDS-Net: Enforcing Diffeomorphisms in Spatial Transformers to Guarantee Topology Preservation in Segmentations](https://miccai2021.org/openaccess/paperlinks/2021/09/01/476-Paper0524.html) | [Code](https://github.com/mwyburd/TEDS-Net) | | [Text2Brain: Synthesis of Brain Activation Maps from Free-form Text Query](https://miccai2021.org/openaccess/paperlinks/2021/09/01/479-Paper1611.html) | [Code](https://github.com/sabunculab/text2brain) | | [Topological Learning and Its Application to Multimodal Brain Network Integration](https://miccai2021.org/openaccess/paperlinks/2021/09/01/481-Paper1088.html) | [Code](https://topolearn.github.io/topo-loss) | | [Towards Robust General Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/486-Paper0112.html) | [Code](https://github.com/BCV-Uniandes/ROG) | | [Towards Semantic Interpretation of Thoracic Disease and COVID-19 Diagnosis Models](https://miccai2021.org/openaccess/paperlinks/2021/09/01/487-Paper1298.html) | [Code](https://github.com/CAMP-eXplain-AI/CheXplain-Dissection) | | [Training Automatic View Planner for Cardiac MR Imaging via Self-Supervision by Spatial Relationship between Views](https://miccai2021.org/openaccess/paperlinks/2021/09/01/490-Paper0860.html) | [Code](https://github.com/wd111624/CMR_plan) | | [TransBTS: Multimodal Brain Tumor Segmentation Using Transformer](https://miccai2021.org/openaccess/paperlinks/2021/09/01/492-Paper0295.html) | [Code](https://github.com/Wenxuan-1119/TransBTS) | | [TransCT: Dual-path Transformer for Low Dose Computed Tomography](https://miccai2021.org/openaccess/paperlinks/2021/09/01/493-Paper0210.html) | [Code](https://github.com/zzc623/TransCT) | | [Transfer Learning of Deep Spatiotemporal Networks to Model Arbitrarily Long Videos of Seizures](https://miccai2021.org/openaccess/paperlinks/2021/09/01/494-Paper0995.html) | [Code](https://github.com/fepegar/gestures-miccai-2021) | | [Transformer Network for Significant Stenosis Detection in CCTA of Coronary Arteries](https://miccai2021.org/openaccess/paperlinks/2021/09/01/495-Paper0812.html) | [Code](https://github.com/XinghuaMa/TR-Net) | | [TransFuse: Fusing Transformers and CNNs for Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/496-Paper0016.html) | [Code](https://github.com/Rayicer/TransFuse) | | [Trans-SVNet: Accurate Phase Recognition from Surgical Videos via Hybrid Embedding Aggregation Transformer](https://miccai2021.org/openaccess/paperlinks/2021/09/01/498-Paper0184.html) | [Code](https://github.com/xjgaocs/Trans-SVNet) | | [Tripled-uncertainty Guided Mean Teacher model for Semi-supervised Medical Image Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/499-Paper1147.html) | [Code](https://github.com/DeepMedLab/Tri-U-MT) | | [TumorCP: A Simple but Effective Object-Level Data Augmentation for Tumor Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/501-Paper1885.html) | [Code](https://github.com/YaoZhang93/TumorCP) | | [TUN-Det: A Novel Network for Thyroid Ultrasound Nodule Detection](https://miccai2021.org/openaccess/paperlinks/2021/09/01/502-Paper2064.html) | [Code](https://github.com/Medo-ai/TUN-Det) | | [Ultrasound Video Transformers for Cardiac Ejection Fraction Estimation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/506-Paper0702.html) | [Code](https://github.com/HReynaud/UVT) | | [Uncertainty-Aware Label Rectification for Domain Adaptive Mitochondria Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/508-Paper0640.html) | [Code](https://github.com/ngchc/DA-MitoSeg) | | [Uncertainty-Guided Progressive GANs for Medical Image Translation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/509-Paper1353.html) | [Code](https://github.com/ExplainableML/UncerGuidedI2I) | | [Unsupervised Diffeomorphic Surface Registration and Non-Linear Modelling](https://miccai2021.org/openaccess/paperlinks/2021/09/01/512-Paper0947.html) | [Code](https://gitlab.kuleuven.be/u0132345/deepdiffeomorphicfaceregistration) | | [Unsupervised Network Learning for Cell Segmentation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/514-Paper0621.html) | [Code](https://github.com/LiangHann/USAR) | | [Unsupervised Representation Learning Meets Pseudo-Label Supervised Self-Distillation: A New Approach to Rare Disease Classification](https://miccai2021.org/openaccess/paperlinks/2021/09/01/515-Paper1834.html) | [Code](https://github.com/SunjHan/Hybrid-Representation-Learning-Approach-for-Rare-Disease-Classification) | | [USCL: Pretraining Deep Ultrasound Image Diagnosis Model through Video Contrastive Representation Learning](https://miccai2021.org/openaccess/paperlinks/2021/09/01/516-Paper0040.html) | [Code](https://github.com/983632847/USCL) | | [Variational Topic Inference for Chest X-Ray Report Generation](https://miccai2021.org/openaccess/paperlinks/2021/09/01/520-Paper2084.html) | [Code](https://github.com/ivonajdenkoska/variational-xray-report-gen.git) | | [VinDr-SpineXR: A deep learning framework for spinal lesions detection and classification from radiographs](https://miccai2021.org/openaccess/paperlinks/2021/09/01/523-Paper0837.html) | [Code](https://github.com/vinbigdata-medical/vindr-spinexr) | | [Visual-Assisted Probe Movement Guidance for Obstetric Ultrasound Scanning using Landmark Retrieval](https://miccai2021.org/openaccess/paperlinks/2021/09/01/524-Paper1291.html) | [Code](https://github.com/dachengxiaocheng/Visual-Assisted-Probe-Movement.git) | | [Whole Heart Mesh Generation For Image-Based Computational Simulations By Learning Free-From Deformations](https://miccai2021.org/openaccess/paperlinks/2021/09/01/529-Paper2144.html) | [Code](https://github.com/fkong7/HeartFFDNet) | | [Whole Slide Images are 2D Point Clouds: Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks](https://miccai2021.org/openaccess/paperlinks/2021/09/01/530-Paper2410.html) | [Code](https://github.com/mahmoodlab/Patch-GCN) | | [You Only Learn Once: Universal Anatomical Landmark Detection](https://miccai2021.org/openaccess/paperlinks/2021/09/01/531-Paper0185.html) | [Code](https://github.com/ICT-MIRACLE-lab/YOLO_Universal_Anatomical_Landmark_Detection) | This list is generated using code from https://github.com/GJiananChen/MICCAI2021-OpenReviewAnalysis.