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README.md 1.34 KB

# CNVMotif

![R-CMD-check](https://github.com/ShixiangWang/CNVMotif/workflows/R-CMD-check/badge.svg)
[![Codecov test
coverage](https://codecov.io/gh/ShixiangWang/CNVMotif/branch/master/graph/badge.svg)](https://codecov.io/gh/ShixiangWang/CNVMotif?branch=master)

The goal of CNVMotif is to explore, analyze and visualize the copy
number variation (CNV) motifs in cancer genomics.

## Installation

~~You can install the released version of {CNVMotif} from
[CRAN](https://CRAN.R-project.org) with:~~

``` r
install.packages("CNVMotif")
```

And the development version from [GitHub](https://github.com/) with:

``` r
# install.packages("devtools")
devtools::install_github("ShixiangWang/CNVMotif")
```

## Example

``` r
library(CNVMotif)
library(ggseqlogo)
#> Warning: package 'ggseqlogo' was built under R version 4.0.1
data(ggseqlogo_sample)

## Same as ggseqlogo()
p1 <- ggseqlogo2(seqs_dna[[1]])
p1
```

``` r

## Extra feature
idor <- as.character(1:4)
names(idor) <- c("A", "C", "G", "T")
p2 <- ggseqlogo2(seqs_dna[[1]], idor = idor)
p2
```

一键复制编辑原始数据按行查看历史

提交于 2020-08-12 10:35 . 更改包名

CNVMotif

The goal of CNVMotif is to explore, analyze and visualize the copy number variation (CNV) motifs in cancer genomics.

Installation

~~You can install the released version of {CNVMotif} from CRAN with:~~

install.packages("CNVMotif")

And the development version from GitHub with:

# install.packages("devtools")
devtools::install_github("ShixiangWang/CNVMotif")

Example

library(CNVMotif)
library(ggseqlogo)
#> Warning: package 'ggseqlogo' was built under R version 4.0.1
data(ggseqlogo_sample)

## Same as ggseqlogo()
p1 <- ggseqlogo2(seqs_dna[[1]])
p1


## Extra feature
idor <- as.character(1:4)
names(idor) <- c("A", "C", "G", "T")
p2 <- ggseqlogo2(seqs_dna[[1]], idor = idor)
p2

https://gitee.com/ShixiangWang/CNVMotif.git

git@gitee.com:ShixiangWang/CNVMotif.git

ShixiangWang

CNVMotif

master

王诗翔 / CNVMotif

CNVMotif

Installation

Example

简介

发行版

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近期动态

王诗翔 / CNVMotif .gitee-modal { width: 500px !important; }

CNVMotif

Installation

Example

简介

发行版

贡献者

近期动态

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王诗翔 / CNVMotif