https://www.jianshu.com/p/bbf9cb13b41a A single-cell atlas of the peripheral immune response in patients with severe COVID-19 影响因子: 36.13PMID:32514174期刊年卷:Nat Med 2020 07; 26(7)
包含SingleR参考数据集 SingleR详细教程:SingleR出了一本书:《Assigning cell types with SingleR》 https://ltla.github.io/SingleRBook/index.html
CellPhoneDB: Inferring cell-cell communication from combined expression of multi-subunit receptor-ligand complexes Efremova M, Vento-Tormo M, Teichmann S, Vento-Tormo R. Nat Protoc. 2020 Apr;15(4):1484-1506. doi: 10.1038/s41596-020-0292-x. Epub 2020 Feb 26.
Tcr Receptor Utilities for Solid Tissue (TRUST) is a computational tool to analyze TCR and BCR sequences using unselected RNA sequencing data, profiled from solid tissues, including tumors. TRUST4 performs de novo assembly on V, J, C genes including the hypervariable complementarity-determining region 3 (CDR3) and reports consensus of BCR/TCR sequences. TRUST4 then realigns the contigs to IMGT reference gene sequences to report the corresponding information. TRUST4 supports both single-end and p
scRepertoire was built to process data derived from the 10x Genomics Chromium Immune Profiling for both T-cell receptor (TCR) and immunoglobulin (Ig) enrichment workflows and subsequently interacts with the popular Seurat and SingleCellExperiment R packages.
BASIC is a semi-de novo assembly method for assembling BCR and TCR genes from single cell RNA-seq data.
Win10 WSL2 迁移 具体参考:https://blog.csdn.net/tonydz0523/article/details/103443768?utm_medium=distribute.pc_relevant.none-task-blog-BlogCommendFromMachineLearnPai2-1.nonecase&depth_1-utm_source=distribute.pc_relevant.none-task-blog-BlogCommendFromMachineLearnPai2-1.nonecase