Watch chens/gtrellis

Genomic plot in trellis layout

Watch chens/mummer-ggplot

Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.

Watch chens/graphlayouts

new layout algorithms for network visualizations in R

Watch chens/catfasta2phyml

Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file

Watch chens/Dsuite

Fast calculation of the ABBA-BABA statistics across many populations/species

Watch chens/table2itol

Generating iToL annotations from Spreadsheet or CSV files

Watch chens/StructuRly

Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis

Watch chens/scripts

Scripts for analysis used during the course

Watch chens/genome_plots

Genome wide, SV, CNV, SNV rainfall plots

Watch chens/plotCNVHeatmap_genome