Matlab/Octave toolbox for deep learning. Includes Deep Belief Nets, Stacked Autoencoders, Convolutional Neural Nets, Convolutional Autoencoders and vanilla Neural Nets. Each method has examples to get you started.
Fully Convolutional Networks for Semantic Segmentation by Jonathan Long*, Evan Shelhamer*, and Trevor Darrell. CVPR 2015 and PAMI 2016.