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main_S3DIS.py 12.14 KB
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qingyong hu 提交于 2020-04-02 23:42 . fixed bugs
from os.path import join
from RandLANet import Network
from tester_S3DIS import ModelTester
from helper_ply import read_ply
from helper_tool import ConfigS3DIS as cfg
from helper_tool import DataProcessing as DP
from helper_tool import Plot
import tensorflow as tf
import numpy as np
import time, pickle, argparse, glob, os
class S3DIS:
def __init__(self, test_area_idx):
self.name = 'S3DIS'
self.path = '/data/S3DIS'
self.label_to_names = {0: 'ceiling',
1: 'floor',
2: 'wall',
3: 'beam',
4: 'column',
5: 'window',
6: 'door',
7: 'table',
8: 'chair',
9: 'sofa',
10: 'bookcase',
11: 'board',
12: 'clutter'}
self.num_classes = len(self.label_to_names)
self.label_values = np.sort([k for k, v in self.label_to_names.items()])
self.label_to_idx = {l: i for i, l in enumerate(self.label_values)}
self.ignored_labels = np.array([])
self.val_split = 'Area_' + str(test_area_idx)
self.all_files = glob.glob(join(self.path, 'original_ply', '*.ply'))
# Initiate containers
self.val_proj = []
self.val_labels = []
self.possibility = {}
self.min_possibility = {}
self.input_trees = {'training': [], 'validation': []}
self.input_colors = {'training': [], 'validation': []}
self.input_labels = {'training': [], 'validation': []}
self.input_names = {'training': [], 'validation': []}
self.load_sub_sampled_clouds(cfg.sub_grid_size)
def load_sub_sampled_clouds(self, sub_grid_size):
tree_path = join(self.path, 'input_{:.3f}'.format(sub_grid_size))
for i, file_path in enumerate(self.all_files):
t0 = time.time()
cloud_name = file_path.split('/')[-1][:-4]
if self.val_split in cloud_name:
cloud_split = 'validation'
else:
cloud_split = 'training'
# Name of the input files
kd_tree_file = join(tree_path, '{:s}_KDTree.pkl'.format(cloud_name))
sub_ply_file = join(tree_path, '{:s}.ply'.format(cloud_name))
data = read_ply(sub_ply_file)
sub_colors = np.vstack((data['red'], data['green'], data['blue'])).T
sub_labels = data['class']
# Read pkl with search tree
with open(kd_tree_file, 'rb') as f:
search_tree = pickle.load(f)
self.input_trees[cloud_split] += [search_tree]
self.input_colors[cloud_split] += [sub_colors]
self.input_labels[cloud_split] += [sub_labels]
self.input_names[cloud_split] += [cloud_name]
size = sub_colors.shape[0] * 4 * 7
print('{:s} {:.1f} MB loaded in {:.1f}s'.format(kd_tree_file.split('/')[-1], size * 1e-6, time.time() - t0))
print('\nPreparing reprojected indices for testing')
# Get validation and test reprojected indices
for i, file_path in enumerate(self.all_files):
t0 = time.time()
cloud_name = file_path.split('/')[-1][:-4]
# Validation projection and labels
if self.val_split in cloud_name:
proj_file = join(tree_path, '{:s}_proj.pkl'.format(cloud_name))
with open(proj_file, 'rb') as f:
proj_idx, labels = pickle.load(f)
self.val_proj += [proj_idx]
self.val_labels += [labels]
print('{:s} done in {:.1f}s'.format(cloud_name, time.time() - t0))
# Generate the input data flow
def get_batch_gen(self, split):
if split == 'training':
num_per_epoch = cfg.train_steps * cfg.batch_size
elif split == 'validation':
num_per_epoch = cfg.val_steps * cfg.val_batch_size
self.possibility[split] = []
self.min_possibility[split] = []
# Random initialize
for i, tree in enumerate(self.input_colors[split]):
self.possibility[split] += [np.random.rand(tree.data.shape[0]) * 1e-3]
self.min_possibility[split] += [float(np.min(self.possibility[split][-1]))]
def spatially_regular_gen():
# Generator loop
for i in range(num_per_epoch):
# Choose the cloud with the lowest probability
cloud_idx = int(np.argmin(self.min_possibility[split]))
# choose the point with the minimum of possibility in the cloud as query point
point_ind = np.argmin(self.possibility[split][cloud_idx])
# Get all points within the cloud from tree structure
points = np.array(self.input_trees[split][cloud_idx].data, copy=False)
# Center point of input region
center_point = points[point_ind, :].reshape(1, -1)
# Add noise to the center point
noise = np.random.normal(scale=cfg.noise_init / 10, size=center_point.shape)
pick_point = center_point + noise.astype(center_point.dtype)
# Check if the number of points in the selected cloud is less than the predefined num_points
if len(points) < cfg.num_points:
# Query all points within the cloud
queried_idx = self.input_trees[split][cloud_idx].query(pick_point, k=len(points))[1][0]
else:
# Query the predefined number of points
queried_idx = self.input_trees[split][cloud_idx].query(pick_point, k=cfg.num_points)[1][0]
# Shuffle index
queried_idx = DP.shuffle_idx(queried_idx)
# Get corresponding points and colors based on the index
queried_pc_xyz = points[queried_idx]
queried_pc_xyz = queried_pc_xyz - pick_point
queried_pc_colors = self.input_colors[split][cloud_idx][queried_idx]
queried_pc_labels = self.input_labels[split][cloud_idx][queried_idx]
# Update the possibility of the selected points
dists = np.sum(np.square((points[queried_idx] - pick_point).astype(np.float32)), axis=1)
delta = np.square(1 - dists / np.max(dists))
self.possibility[split][cloud_idx][queried_idx] += delta
self.min_possibility[split][cloud_idx] = float(np.min(self.possibility[split][cloud_idx]))
# up_sampled with replacement
if len(points) < cfg.num_points:
queried_pc_xyz, queried_pc_colors, queried_idx, queried_pc_labels = \
DP.data_aug(queried_pc_xyz, queried_pc_colors, queried_pc_labels, queried_idx, cfg.num_points)
if True:
yield (queried_pc_xyz.astype(np.float32),
queried_pc_colors.astype(np.float32),
queried_pc_labels,
queried_idx.astype(np.int32),
np.array([cloud_idx], dtype=np.int32))
gen_func = spatially_regular_gen
gen_types = (tf.float32, tf.float32, tf.int32, tf.int32, tf.int32)
gen_shapes = ([None, 3], [None, 3], [None], [None], [None])
return gen_func, gen_types, gen_shapes
@staticmethod
def get_tf_mapping2():
# Collect flat inputs
def tf_map(batch_xyz, batch_features, batch_labels, batch_pc_idx, batch_cloud_idx):
batch_features = tf.concat([batch_xyz, batch_features], axis=-1)
input_points = []
input_neighbors = []
input_pools = []
input_up_samples = []
for i in range(cfg.num_layers):
neighbour_idx = tf.py_func(DP.knn_search, [batch_xyz, batch_xyz, cfg.k_n], tf.int32)
sub_points = batch_xyz[:, :tf.shape(batch_xyz)[1] // cfg.sub_sampling_ratio[i], :]
pool_i = neighbour_idx[:, :tf.shape(batch_xyz)[1] // cfg.sub_sampling_ratio[i], :]
up_i = tf.py_func(DP.knn_search, [sub_points, batch_xyz, 1], tf.int32)
input_points.append(batch_xyz)
input_neighbors.append(neighbour_idx)
input_pools.append(pool_i)
input_up_samples.append(up_i)
batch_xyz = sub_points
input_list = input_points + input_neighbors + input_pools + input_up_samples
input_list += [batch_features, batch_labels, batch_pc_idx, batch_cloud_idx]
return input_list
return tf_map
def init_input_pipeline(self):
print('Initiating input pipelines')
cfg.ignored_label_inds = [self.label_to_idx[ign_label] for ign_label in self.ignored_labels]
gen_function, gen_types, gen_shapes = self.get_batch_gen('training')
gen_function_val, _, _ = self.get_batch_gen('validation')
self.train_data = tf.data.Dataset.from_generator(gen_function, gen_types, gen_shapes)
self.val_data = tf.data.Dataset.from_generator(gen_function_val, gen_types, gen_shapes)
self.batch_train_data = self.train_data.batch(cfg.batch_size)
self.batch_val_data = self.val_data.batch(cfg.val_batch_size)
map_func = self.get_tf_mapping2()
self.batch_train_data = self.batch_train_data.map(map_func=map_func)
self.batch_val_data = self.batch_val_data.map(map_func=map_func)
self.batch_train_data = self.batch_train_data.prefetch(cfg.batch_size)
self.batch_val_data = self.batch_val_data.prefetch(cfg.val_batch_size)
iter = tf.data.Iterator.from_structure(self.batch_train_data.output_types, self.batch_train_data.output_shapes)
self.flat_inputs = iter.get_next()
self.train_init_op = iter.make_initializer(self.batch_train_data)
self.val_init_op = iter.make_initializer(self.batch_val_data)
if __name__ == '__main__':
parser = argparse.ArgumentParser()
parser.add_argument('--gpu', type=int, default=0, help='the number of GPUs to use [default: 0]')
parser.add_argument('--test_area', type=int, default=5, help='Which area to use for test, option: 1-6 [default: 5]')
parser.add_argument('--mode', type=str, default='train', help='options: train, test, vis')
parser.add_argument('--model_path', type=str, default='None', help='pretrained model path')
FLAGS = parser.parse_args()
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
os.environ['CUDA_VISIBLE_DEVICES'] = str(FLAGS.gpu)
os.environ['TF_CPP_MIN_LOG_LEVEL'] = '2'
Mode = FLAGS.mode
test_area = FLAGS.test_area
dataset = S3DIS(test_area)
dataset.init_input_pipeline()
if Mode == 'train':
model = Network(dataset, cfg)
model.train(dataset)
elif Mode == 'test':
cfg.saving = False
model = Network(dataset, cfg)
if FLAGS.model_path is not 'None':
chosen_snap = FLAGS.model_path
else:
chosen_snapshot = -1
logs = np.sort([os.path.join('results', f) for f in os.listdir('results') if f.startswith('Log')])
chosen_folder = logs[-1]
snap_path = join(chosen_folder, 'snapshots')
snap_steps = [int(f[:-5].split('-')[-1]) for f in os.listdir(snap_path) if f[-5:] == '.meta']
chosen_step = np.sort(snap_steps)[-1]
chosen_snap = os.path.join(snap_path, 'snap-{:d}'.format(chosen_step))
tester = ModelTester(model, dataset, restore_snap=chosen_snap)
tester.test(model, dataset)
else:
##################
# Visualize data #
##################
with tf.Session() as sess:
sess.run(tf.global_variables_initializer())
sess.run(dataset.train_init_op)
while True:
flat_inputs = sess.run(dataset.flat_inputs)
pc_xyz = flat_inputs[0]
sub_pc_xyz = flat_inputs[1]
labels = flat_inputs[21]
Plot.draw_pc_sem_ins(pc_xyz[0, :, :], labels[0, :])
Plot.draw_pc_sem_ins(sub_pc_xyz[0, :, :], labels[0, 0:np.shape(sub_pc_xyz)[1]])
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