Spaniel includes a series of tools to aid the quality control and analysis of Spatial Transcriptomics data. The package contains functions to create a either a Seurat object or SingleCellExperiment from a count matrix and spatial barcode file and provides a method of loading a histologial image into R. The spanielPlot function allows visualisation of metrics contained within the S4 object overlaid onto the image of the tissue.
Spaniel can be installed from Bioconductor. Bioconductor version: Development (3.10)
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install(version='devel')
BiocManager::install("Spaniel")
https://bioconductor.org/packages/devel/bioc/vignettes/Spaniel/inst/doc/spaniel-vignette.html
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