CeleScope is a collection of bioinfomatics analysis pipelines developed at Singleron to process single cell sequencing data generated with Singleron products. These pipelines take paired-end FASTQ files as input and generate output files which can be used for downstream data analysis as well as a summary of QC criteria.
Detailed docs can be found in manual.
git clone https://github.com/singleron-RD/CeleScope.git
cd CeleScope conda create -n celescope -y --file conda_pkgs.txt
Alternatively, you can use mamba to improve speed.
conda install mamba mamba create -n celescope -y --file conda_pkgs.txt
Make sure you have activated the
celescope conda environment before running
pip install celescope.
conda activate celescope pip install celescope