# CeleScope

**Repository Path**: singleron-rd/celescope

## Basic Information

- **Project Name**: CeleScope
- **Description**: GEXSCOPE Single Cell Analysis Pipelines
- **Primary Language**: Python
- **License**: MIT
- **Default Branch**: master
- **Homepage**: https://www.singleronbio.com/
- **GVP Project**: No

## Statistics

- **Stars**: 5
- **Forks**: 4
- **Created**: 2021-03-18
- **Last Updated**: 2026-04-16

## Categories & Tags

**Categories**: Uncategorized

**Tags**: Single-cell

## README

# Introduction
CeleScope is a collection of bioinfomatics analysis pipelines to process single cell sequencing data generated with Singleron products. These pipelines take paired-end FASTQ files as input and generate output files which can be used for downstream data analysis as well as a summary of QC criteria.

# Mirror
If you have problems connecting to github, try:
https://gitee.com/singleron-rd/celescope/

# Documentation
[User guide](./doc/user_guide.md)

# Support
For instant technical assistance and deep-dive queries into the CeleScope source code, you can now interact with this [NotebookLM](https://notebooklm.google.com/notebook/864dd33a-68a3-4f17-85fd-2a781aed4f64 ).

This notebook has been indexed with the complete CeleScope codebase and documents, allowing you to ask specific questions about command-line arguments, algorithm implementations, or error troubleshooting.

Still need help? If the AI does not resolve your query, please use the GitHub Issue Tracker to report malfunctions or ask further questions.

# About
CeleScope is currently developed by Singleron Biotechnologies.

[www.singleron.bio](https://www.singleron.bio)