GEXSCOPE Single Cell Analysis Pipelines
annoXCRtools为单细胞VDJ和单细胞转录组联合分析工具，是基于Seurat工具进行二次开发，转录组分析基本上是依据Seurat，后面整合了转录组和VDJ。
文献分析代码：Diversity, cellular origin and autoreactivity of antibody-secreting cell expansions in acute Systemic Lupus ErythematosusRe analysis of Tipton study with Immcantation pipeline
全长转录本单细胞smart-seq3Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
URD - Reconstruction of Branching Developmental Trajectories 另外一种拟时间分析方法，文章发布在science上面
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.
Visualize next generation sequencing reads over putative structural variants
