• 1
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chens/gtrellis

Genomic plot in trellis layout

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• 0
• 0

chens/mummer-ggplot

Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.

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chens/graphlayouts

new layout algorithms for network visualizations in R

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• 0

chens/catfasta2phyml

Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file

• 1
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chens/Dsuite

Fast calculation of the ABBA-BABA statistics across many populations/species

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chens/table2itol

Generating iToL annotations from Spreadsheet or CSV files

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chens/StructuRly

Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis

• 1
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chens/scripts

Scripts for analysis used during the course

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• 0
• 0

chens/genome_plots

Genome wide, SV, CNV, SNV rainfall plots

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• 0
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chens/plotCNVHeatmap_genome

• 1
• 0
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chens/LocusZoom-Pipeline

LocusZoom Pipeline Project

• 1
• 0
• 0

chens/hapbin

Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)

• 1
• 0
• 0

chens/SNPGenie

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

• 1
• 0
• 0

chens/samplot

Plot structural variant signals from many BAMs and CRAMs

• 1
• 0
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chens/sv_benchmark

Comprehensive benchmark of structural variant callers

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• 0
• 0

chens/scripts-1

Various (potentially useful) perl and bash scripts

• 1
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chens/detectRUNS

detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity

• 1
• 0
• 0

chens/accusyn

AccuSyn: An Accurate Web-based Genome Synteny Browser

• 1
• 0
• 0

chens/genomics_general

General tools for genomic analyses.

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• 0

chens/CAFE_fig

A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)